genome.fa.s1461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1461
Parameters: 2 7 7 80 10 50 1000
Length:  64137

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4512--4587	20	3.9	20	76	15	70	80	15	2	1	0.90
4492--4578	37	2.3	39	84	11	121	81	11	5	1	0.91
4523--4586	12	5.2	12	80	14	76	82	14	1	1	0.81
4512--4587	4	18.5	4	73	10	55	80	15	2	1	0.90
7803--7855	21	2.6	21	88	5	74	32	18	13	35	1.90
9661--9948	49	5.9	49	90	0	371	25	27	16	31	1.96
9967--10100	47	2.9	47	89	0	178	23	29	14	33	1.94
10930--10983	26	2.1	26	85	0	72	35	14	14	35	1.88
11004--11032	15	1.9	15	100	0	58	34	13	13	37	1.85
12444--12483	21	1.9	21	85	10	55	52	5	2	40	1.37
14643--14668	13	2.0	13	100	0	52	38	15	15	30	1.88
16887--16931	21	2.1	21	84	8	56	53	4	20	22	1.63
18744--18773	15	2.0	15	93	0	51	50	16	20	13	1.78
20990--21035	21	2.2	20	81	11	58	32	19	4	43	1.71
23391--23416	13	2.0	13	100	0	52	38	15	15	30	1.88
29159--29191	16	2.1	16	100	0	66	12	24	21	42	1.86
35981--36127	73	2.0	73	95	0	267	21	21	20	37	1.95
41756--41811	21	2.7	21	80	5	60	32	1	0	66	1.03
46990--47144	52	2.9	52	80	10	163	33	9	26	30	1.88
47003--47189	52	3.6	51	80	5	153	33	11	26	29	1.91
47173--47250	27	2.8	28	84	1	95	21	20	34	23	1.97
47122--47324	103	1.9	105	84	3	266	28	16	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47308--47428	51	2.4	51	88	2	172	31	13	26	28	1.94
47345--47473	51	2.5	51	86	5	163	34	11	26	27	1.91
47414--47584	79	2.2	79	84	2	218	33	15	25	25	1.95
47595--47717	51	2.4	52	87	6	178	31	11	25	31	1.91
49534--50154	55	11.0	55	85	8	791	24	20	27	27	1.99
49606--49749	28	5.2	29	61	24	85	22	18	29	29	1.97
49533--50185	116	5.7	112	89	5	763	24	20	28	27	1.99
49534--50406	171	5.1	170	79	12	881	25	19	27	26	1.99
50064--50152	27	3.2	29	64	20	71	25	17	28	28	1.98
50205--50400	60	3.3	59	87	5	295	27	19	26	26	1.99
50050--50345	160	1.9	155	87	4	432	27	18	29	25	1.98
51366--51401	15	2.5	14	90	4	54	0	2	8	88	0.59
51367--51401	12	2.8	12	91	4	52	0	2	8	88	0.61

Tables:   1

The End!