genome.fa.s1475.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1475
Parameters: 2 7 7 80 10 50 1000
Length:  209212

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149129--149343	87	2.5	88	90	0	342	26	20	26	26	1.99
149365--149460	28	3.3	29	80	4	113	16	17	30	35	1.93
149365--149460	30	3.3	29	78	7	106	16	17	30	35	1.93
149433--149663	33	7.4	32	76	12	194	36	13	30	19	1.91
149569--149650	27	3.1	26	92	3	128	30	14	31	23	1.94
149653--149866	31	6.9	30	80	7	216	32	14	28	23	1.95
149627--149869	125	2.0	123	85	8	332	32	14	29	23	1.94
151160--151210	7	7.1	7	77	6	50	0	3	13	82	0.81
151162--151210	22	2.2	22	80	16	57	0	4	12	83	0.77
151148--151210	14	4.0	16	76	19	62	0	4	15	79	0.90
158690--158762	20	3.6	20	81	3	101	35	13	19	31	1.91
158690--158784	41	2.3	42	96	1	174	40	12	17	29	1.87
158823--158848	13	2.0	13	100	0	52	38	15	15	30	1.88
162910--162948	15	2.6	15	91	0	60	51	15	20	12	1.76
164963--165040	20	3.6	21	73	15	70	25	12	16	44	1.83
165027--165065	13	3.0	13	96	0	69	30	17	15	35	1.91
166871--166916	16	2.8	16	93	6	74	28	2	39	30	1.69
167523--167595	20	3.6	20	81	3	101	35	13	19	31	1.91
167523--167617	41	2.3	42	96	1	174	40	12	17	29	1.87
167656--167681	13	2.0	13	100	0	52	38	15	15	30	1.88
168718--169008	60	5.0	60	79	4	254	16	14	20	48	1.80
168799--169023	120	1.9	120	85	0	315	16	16	19	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169378--169752	63	6.0	63	77	4	276	20	20	15	43	1.88
169378--169573	31	6.3	30	74	13	155	18	20	17	42	1.89
169378--169692	62	5.0	61	76	5	231	20	20	15	42	1.88
169816--169958	65	2.2	66	80	8	159	20	22	11	45	1.83
170241--171055	65	12.7	65	71	7	414	19	21	14	43	1.87
170884--171091	64	3.2	64	73	5	161	21	23	12	41	1.88
172063--172119	27	2.1	29	81	12	68	24	12	3	59	1.48
172118--172164	17	2.8	16	81	12	51	21	2	4	72	1.12
172121--172165	23	1.9	24	86	4	65	20	2	4	73	1.11
173599--173950	156	2.3	156	80	4	372	29	15	17	36	1.92
178222--178297	20	3.8	19	86	6	98	38	11	13	36	1.81
179124--179239	32	3.5	35	79	9	104	24	18	26	31	1.97
179160--179756	28	20.9	28	86	4	773	22	17	31	28	1.97
179154--179756	85	7.0	85	88	2	809	23	17	30	28	1.97
180952--181024	1	73.0	1	77	0	56	2	1	9	86	0.73
180941--181026	19	4.6	18	80	13	77	3	2	10	83	0.85
180941--181023	9	8.9	9	76	10	78	2	2	10	84	0.81
180928--180987	20	2.8	21	85	10	77	1	3	11	83	0.84
190303--190327	13	1.9	13	100	0	50	36	16	16	32	1.90
190390--190414	13	1.9	13	100	0	50	32	16	16	36	1.90
190423--190547	52	2.4	52	95	0	223	36	18	17	28	1.94
198903--198928	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198989--199061	20	3.6	20	81	3	101	31	19	13	35	1.91
198967--199061	41	2.3	42	96	1	174	29	17	12	40	1.87
201500--201538	13	3.0	13	96	0	69	35	15	17	30	1.91
201524--201602	20	3.7	20	70	20	70	45	16	12	25	1.82
203613--203643	15	2.1	15	93	0	53	12	22	16	48	1.80
207700--207725	13	2.0	13	100	0	52	30	15	15	38	1.88
207785--207857	20	3.6	20	81	3	101	31	19	13	35	1.91
207763--207857	41	2.3	42	96	1	174	29	17	12	40	1.87
208794--208935	30	4.7	31	80	9	168	26	29	18	25	1.98
208794--208958	30	5.5	31	80	8	155	26	29	16	27	1.97
208794--208965	60	2.8	61	77	11	183	26	29	16	26	1.97
208883--209056	30	5.8	30	76	9	115	24	30	14	31	1.94
208943--209212	33	8.5	33	76	16	220	21	36	11	30	1.90
208943--209174	60	3.8	59	80	12	206	22	36	12	28	1.90
208946--209183	32	7.7	32	77	15	218	22	36	13	28	1.91
209065--209212	65	2.2	70	84	11	195	20	37	11	29	1.88

Tables:   1   2

The End!