genome.fa.s1476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1476
Parameters: 2 7 7 80 10 50 1000
Length:  43290

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--867	260	3.3	264	90	8	1377	25	24	19	29	1.98
1--893	259	3.4	263	89	8	1371	25	24	19	30	1.98
962--3235	140	16.1	143	90	6	3492	28	15	13	42	1.85
962--4490	280	12.3	285	83	11	3718	29	15	13	41	1.85
3514--4490	142	6.9	142	88	7	1384	30	16	12	40	1.85
5633--5700	22	2.9	24	89	6	104	57	10	10	22	1.62
5633--5700	24	2.9	23	85	8	93	57	10	10	22	1.62
12808--12841	12	2.8	12	100	0	68	0	0	5	94	0.32
12807--12841	1	35.0	1	88	0	52	0	0	5	94	0.32
16407--17757	174	7.8	174	98	0	2603	35	22	17	23	1.95
17758--20355	455	5.7	455	98	0	5034	25	28	18	26	1.98
20055--20653	302	2.0	302	99	0	1189	28	27	15	28	1.96
19597--21112	757	2.0	757	99	0	2996	26	28	17	27	1.98
20354--22976	455	5.8	455	96	1	4790	25	28	18	26	1.98
20354--22976	908	2.9	908	97	1	4856	25	28	18	26	1.98
22706--24095	268	5.2	266	95	3	2467	25	24	19	30	1.98
22706--24095	535	2.6	538	95	4	2512	25	24	19	30	1.98
24190--26363	144	15.1	144	96	0	3843	29	15	13	42	1.84
26665--27660	144	6.9	143	92	2	1609	30	16	12	40	1.85
26665--27660	287	3.4	287	92	2	1629	30	16	12	40	1.85
26653--27660	430	2.3	434	94	2	1740	31	16	12	40	1.85
28820--28888	24	2.9	24	93	2	113	56	10	11	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28820--28879	23	2.6	23	97	2	111	55	10	13	21	1.67
36006--36039	12	2.8	12	100	0	68	0	0	5	94	0.32
36005--36039	1	35.0	1	88	0	52	0	0	5	94	0.32
39599--40947	174	7.8	174	97	1	2496	35	22	18	23	1.95
39599--40947	346	3.9	348	97	1	2496	35	22	18	23	1.95
40948--43290	454	5.2	455	96	1	4336	25	28	18	26	1.98
40948--43290	907	2.6	908	96	1	4332	25	28	18	26	1.98

Tables:   1

The End!