genome.fa.s1482.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1482
Parameters: 2 7 7 80 10 50 1000
Length:  284187

Tables:   1   2   

This is table  2  of  2  ( 192 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179587--179643	26	2.2	26	80	0	60	38	26	7	28	1.82
179834--180306	28	16.8	28	77	7	422	27	31	18	22	1.97
179835--180306	56	8.4	56	86	4	499	27	31	18	22	1.97
180253--180362	32	3.5	32	82	13	106	29	27	19	24	1.98
180260--180362	31	3.2	31	82	9	102	28	26	19	26	1.99
184978--185202	96	2.3	96	77	6	229	35	12	21	29	1.91
186452--186491	21	2.0	19	90	9	62	47	15	20	17	1.83
187331--187470	52	2.7	51	84	2	181	44	10	13	32	1.77
189205--189283	6	12.5	6	72	17	54	77	2	15	5	1.05
189205--189261	28	2.0	29	86	3	80	78	1	15	3	0.96
189233--189277	23	2.0	23	86	8	65	73	2	17	6	1.15
189294--189327	11	3.0	12	91	8	54	79	0	11	8	0.94
192781--192823	18	2.3	19	84	4	52	34	4	9	51	1.55
195354--195394	21	1.9	22	85	5	57	63	0	0	36	0.95
195366--195407	15	2.8	15	83	16	52	66	0	0	33	0.92
196179--196237	19	3.3	18	81	9	68	33	0	0	66	0.92
196182--196220	19	2.1	19	95	0	69	28	0	0	71	0.86
197140--197180	21	1.9	22	95	5	75	56	0	4	39	1.21
197140--197190	21	2.4	21	87	9	68	58	3	3	33	1.35
199739--199791	20	2.6	21	85	11	74	39	11	18	30	1.86
199739--199812	21	3.6	21	85	7	80	37	13	18	29	1.90
199758--199812	20	2.7	20	88	2	74	38	14	18	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199842--199913	20	3.6	20	66	7	56	37	13	8	40	1.75
199835--199912	40	2.0	40	86	0	111	38	14	8	38	1.77
208270--208304	15	2.2	17	90	10	56	28	8	0	62	1.24
215533--215579	17	3.0	15	79	11	58	53	10	0	36	1.36
219394--219608	98	2.2	95	84	4	270	26	22	12	38	1.89
219707--219855	79	1.9	79	90	2	237	30	19	9	40	1.83
220781--220814	16	2.1	16	94	0	59	41	14	14	29	1.86
226041--226074	17	2.0	17	100	0	68	29	11	29	29	1.92
226630--226659	15	2.1	15	93	6	53	23	20	0	56	1.42
227229--227275	20	2.4	20	82	3	60	31	19	14	34	1.92
227220--227274	19	2.8	19	83	2	65	30	18	14	36	1.91
228443--228609	79	2.1	79	87	0	235	31	13	26	28	1.94
228565--228639	28	2.7	28	91	0	123	25	21	32	21	1.98
228565--228757	107	1.8	106	86	3	280	29	16	29	24	1.97
228672--228747	27	2.7	29	84	9	97	22	18	34	25	1.96
231318--231399	28	2.9	28	83	7	96	25	17	32	24	1.96
231379--231551	52	3.4	51	80	5	204	32	12	25	30	1.92
231593--231727	51	2.6	51	78	12	150	32	9	25	32	1.88
231326--231715	211	1.8	211	87	3	579	30	12	26	29	1.93
234060--234114	20	2.8	20	82	0	74	45	16	14	23	1.84
234134--234201	19	3.9	18	76	23	83	38	14	11	35	1.83
234156--234180	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234137--234199	32	2.0	32	96	0	117	36	15	12	34	1.86
235270--235294	13	1.9	13	100	0	50	32	20	16	32	1.94
244991--245024	17	1.9	18	88	5	52	47	0	0	52	1.00
244999--247466	834	3.0	828	97	1	4621	43	8	8	39	1.67
247582--247621	14	2.8	14	92	3	62	70	0	0	30	0.88
247587--247626	13	3.0	13	88	3	53	67	2	0	30	1.04
247731--247772	18	2.4	17	84	7	57	73	7	0	19	1.05
248890--248937	17	2.8	17	80	3	51	43	0	2	54	1.12
249693--249748	20	2.8	19	73	7	58	58	5	1	33	1.31
249714--249771	23	2.5	23	85	2	80	65	3	0	31	1.09
254367--254438	31	2.3	31	100	0	144	38	8	18	34	1.80
259796--259824	9	3.3	9	90	9	51	79	0	0	20	0.74
259798--259836	12	3.2	12	85	7	51	76	0	2	20	0.90
260163--260193	13	2.4	13	94	0	53	48	0	0	51	1.00
262634--262670	18	2.0	20	89	10	60	43	16	10	29	1.82
265384--265427	19	2.3	19	81	11	54	59	0	6	34	1.24
265540--265752	107	2.0	107	87	3	313	31	15	13	39	1.86
272421--272516	45	2.3	39	78	18	95	59	1	1	38	1.11
273128--273159	15	2.1	15	94	0	55	62	3	0	34	1.11
273130--273168	16	2.4	16	82	0	51	66	2	0	30	1.05
273240--273277	19	2.0	20	84	5	51	55	10	5	28	1.56
274501--274588	20	4.7	19	67	23	53	38	13	14	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274635--274692	20	2.8	21	84	12	84	34	15	15	34	1.89
274615--274689	20	3.6	20	79	13	80	36	16	16	32	1.90
274613--274692	43	1.9	43	87	5	119	37	15	15	32	1.88
274708--274750	20	2.0	22	86	8	63	39	2	9	48	1.48
278421--278463	18	2.5	17	82	14	52	58	2	6	32	1.38
279734--279758	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2

The End!