genome.fa.s1495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1495
Parameters: 2 7 7 80 10 50 1000
Length:  148766

Tables:   1   2   

This is table  1  of  2  ( 138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303--1355	17	3.3	15	73	17	52	77	3	7	11	1.10
6752--6786	18	1.9	18	94	0	61	20	5	8	65	1.40
8723--8774	25	2.0	25	81	3	59	32	0	11	55	1.36
11103--11174	36	2.1	34	82	10	83	52	0	0	47	1.00
12897--12949	24	2.3	23	74	9	54	45	1	1	50	1.23
15472--15525	2	27.0	2	96	0	99	51	0	0	48	1.00
16832--16873	21	2.0	21	100	0	84	28	14	19	38	1.90
17466--17502	13	2.7	14	84	16	51	48	0	0	51	1.00
20440--20487	17	2.8	18	75	9	55	33	0	2	64	1.05
20440--20509	14	4.5	15	74	13	54	34	0	1	64	1.03
20458--20545	34	2.5	34	83	7	97	42	0	0	57	0.98
21082--21107	2	13.0	2	100	0	52	50	0	0	50	1.00
23306--23360	27	2.0	27	89	3	83	67	3	0	29	1.08
23322--23373	23	2.3	22	83	9	68	65	1	0	32	1.04
23351--23399	19	2.5	20	81	15	59	55	2	0	42	1.11
23883--23932	25	1.9	26	84	8	66	58	0	0	42	0.98
23918--23957	17	2.3	18	86	4	55	45	7	0	47	1.31
24263--24299	12	3.2	12	81	14	51	70	0	0	29	0.88
24257--24315	20	2.9	20	80	11	66	66	0	0	33	0.92
24276--24325	15	3.3	15	78	13	57	58	0	0	42	0.98
24276--24325	10	4.8	11	80	7	52	58	0	0	42	0.98
24473--24535	14	4.6	13	75	16	65	66	3	0	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24481--24532	23	2.4	21	79	14	61	69	3	0	26	1.06
24475--24528	6	9.2	6	73	18	51	68	3	0	27	1.06
25044--25072	2	14.5	2	100	0	58	48	0	0	51	1.00
25503--25527	13	1.9	13	100	0	50	48	0	4	48	1.20
25660--25690	14	2.1	15	94	5	55	70	0	0	29	0.87
25825--25857	14	2.4	14	95	5	59	36	12	0	51	1.39
26998--27175	97	1.8	97	84	4	243	45	14	15	25	1.83
27337--27362	3	8.7	3	100	0	52	69	30	0	0	0.89
27869--27929	13	4.8	13	74	9	63	57	0	0	42	0.98
28242--28316	33	2.3	33	81	6	82	64	0	0	36	0.94
28476--28512	9	4.3	9	86	10	51	51	0	0	48	1.00
29169--29200	17	1.9	17	93	6	57	43	0	0	56	0.99
31901--31942	3	14.0	3	100	0	84	66	0	0	33	0.92
33226--33266	21	2.0	21	95	0	73	60	2	2	34	1.23
34434--34474	22	1.9	21	85	14	57	36	2	0	60	1.10
34446--34512	35	1.9	35	82	11	84	47	0	0	52	1.00
34836--34864	12	2.5	12	94	5	51	51	6	6	34	1.55
36578--36643	2	33.5	2	83	3	80	46	4	0	48	1.22
37041--37082	11	3.9	11	78	3	50	33	4	0	61	1.17
37037--37102	22	2.8	23	86	6	89	31	3	0	65	1.08
37034--37093	27	2.2	28	82	8	70	30	3	0	66	1.07
37338--37412	33	2.3	33	86	2	98	34	1	5	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37459--37543	38	2.3	38	93	2	145	38	1	8	51	1.39
37979--38037	29	2.0	29	84	12	77	52	3	1	42	1.28
38323--38365	22	2.0	22	90	9	70	44	0	0	55	0.99
38362--38398	18	2.1	18	89	0	56	56	0	0	43	0.99
38882--38931	2	25.0	2	87	0	73	44	0	6	50	1.26
39059--39088	12	2.6	12	94	5	53	33	0	0	66	0.92
39223--39279	14	3.9	14	79	11	53	42	1	1	54	1.21
39432--39473	23	1.9	23	85	9	61	59	2	2	35	1.23
40084--40129	16	2.9	15	87	9	65	52	0	0	47	1.00
42172--42221	14	3.5	14	81	5	64	58	0	2	40	1.10
42783--42820	18	2.1	19	90	5	60	44	0	0	55	0.99
42818--42855	18	2.0	20	90	10	62	52	0	0	47	1.00
42883--42927	20	2.1	23	88	12	69	57	8	0	33	1.30
43155--43215	2	34.0	2	75	21	64	55	0	0	44	0.99
43148--43215	10	7.3	10	75	24	53	54	0	0	45	0.99
43143--43216	8	9.2	8	75	22	59	52	1	0	45	1.09
43361--43439	36	2.2	36	80	6	90	48	0	0	51	1.00
43691--43742	26	2.0	26	85	7	70	40	1	1	55	1.22
43926--44010	36	2.3	38	75	17	90	55	0	0	44	0.99
44262--44297	18	1.9	19	88	5	56	66	5	0	27	1.13
44733--44777	18	2.5	17	82	10	54	53	0	0	46	1.00
45136--45179	22	2.0	23	82	13	56	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45156--45267	55	2.0	55	96	0	206	42	6	4	46	1.49
51938--51979	21	2.0	22	90	4	68	78	0	9	11	0.96
52220--52289	20	3.4	20	81	18	65	38	0	0	61	0.96
52254--52303	23	2.2	22	82	3	55	44	0	0	56	0.99
53604--53659	22	2.6	22	76	21	64	58	0	0	41	0.98
55999--56048	2	25.0	2	100	0	100	50	0	0	50	1.00
56279--56340	32	1.9	33	83	3	81	41	3	1	53	1.27
56333--56397	22	3.0	22	76	13	71	24	0	6	69	1.11
56329--56399	11	6.5	11	75	6	63	26	0	5	67	1.12
56692--56744	26	2.0	26	82	13	65	54	0	1	43	1.11
58193--58263	36	1.9	37	82	2	90	50	0	4	45	1.21
58235--58276	22	2.0	21	86	13	59	57	2	0	40	1.12
58900--58944	24	2.0	23	83	12	58	55	2	0	42	1.12
59147--59175	13	2.2	13	100	0	58	20	0	0	79	0.74
59519--59565	23	2.1	21	84	7	58	36	0	2	61	1.08
60832--60878	21	2.2	21	85	7	60	42	0	4	53	1.20
60913--60948	16	2.2	17	95	5	65	66	0	0	33	0.92
60919--60970	16	2.9	18	86	8	63	59	0	0	40	0.97
60942--60980	19	1.9	19	85	10	51	53	2	2	41	1.28
63078--63133	22	2.7	20	73	13	58	57	0	3	39	1.16
63596--63682	19	4.8	19	65	13	51	55	0	1	43	1.07
63780--63887	36	3.0	36	94	0	189	44	1	16	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64304--64364	22	2.7	23	78	14	65	40	1	0	57	1.08
64467--64530	22	3.0	21	71	13	58	45	0	0	54	0.99
67944--67984	21	1.9	22	85	14	59	39	2	2	56	1.26
68997--69048	26	1.9	26	84	7	68	51	0	0	48	1.00
70350--70380	2	15.5	2	100	0	62	51	48	0	0	1.00
70593--70627	2	17.5	2	93	0	61	48	2	0	48	1.16
75815--75873	14	4.1	14	72	22	50	71	0	0	28	0.87
95896--95945	14	3.4	15	81	18	61	74	0	24	2	0.93
95893--95945	10	4.9	10	82	17	70	75	0	22	1	0.90
95893--95945	24	2.4	22	85	14	74	75	0	22	1	0.90
95893--95947	16	3.3	16	75	25	60	76	0	21	1	0.88
95896--95955	20	3.0	20	83	9	61	73	0	21	5	1.02
102362--102404	22	1.9	23	85	4	61	72	11	11	4	1.27
102364--102449	40	2.2	39	81	12	95	72	9	12	5	1.28
102702--102733	12	2.8	11	90	9	55	90	9	0	0	0.45
103784--104411	27	23.0	27	90	2	907	23	33	14	28	1.94
104408--104995	32	18.4	31	91	2	861	30	34	18	17	1.93
104408--104995	64	9.2	64	94	1	955	30	34	18	17	1.93
106260--106305	4	11.8	4	78	21	53	76	0	21	2	0.90
106257--106321	21	3.1	21	84	2	78	76	0	18	4	0.95
106264--106311	10	4.7	10	79	5	60	77	0	20	2	0.88
106264--106305	14	2.7	16	89	10	61	76	0	21	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106258--106313	18	3.3	16	75	20	60	78	0	19	1	0.84
110739--110791	25	2.1	25	82	6	63	60	0	7	32	1.25
112120--112173	17	3.3	17	72	23	53	57	1	1	38	1.20
112283--112462	89	2.0	89	100	0	360	30	12	13	43	1.80
113094--113122	9	3.2	9	100	0	58	34	0	24	41	1.55
113297--113334	19	2.0	19	100	0	76	42	5	10	42	1.62
114591--114626	18	2.0	18	88	0	54	75	0	11	13	1.06
115135--115468	159	2.1	158	84	3	420	30	14	8	46	1.75
116868--117365	254	1.9	256	92	2	842	32	13	7	45	1.72
117162--117504	161	2.2	161	82	4	410	31	14	7	46	1.72

Tables:   1   2