genome.fa.s1521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1521
Parameters: 2 7 7 80 10 50 1000
Length:  76415

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494--564	27	2.6	27	82	13	83	21	7	25	46	1.76
11699--11804	27	3.9	27	89	1	149	30	31	13	25	1.93
11699--11804	54	1.9	55	90	1	169	30	31	13	25	1.93
11711--11824	27	4.1	27	87	5	131	31	33	13	21	1.92
11734--12115	28	13.6	28	83	6	371	30	30	16	22	1.96
11831--15159	56	58.9	56	81	5	3469	30	27	16	24	1.97
11734--15159	84	40.4	84	80	6	3075	30	27	16	24	1.97
12129--15159	28	107.5	28	82	4	3074	31	27	16	24	1.97
15315--15389	25	3.2	25	68	14	77	21	28	18	32	1.97
15275--15432	46	3.4	46	90	2	228	23	27	17	31	1.96
15297--15366	21	3.1	22	69	15	70	22	28	15	32	1.95
15306--15483	48	3.8	48	88	3	227	21	26	17	33	1.96
16180--16293	40	2.8	40	94	2	203	32	14	14	38	1.86
16259--16435	51	3.7	49	76	16	201	29	16	10	43	1.81
16219--16435	91	2.4	91	92	1	364	30	15	11	42	1.82
16180--16387	20	9.9	20	76	16	163	30	14	12	41	1.84
16394--16435	20	2.0	20	90	4	66	30	16	9	42	1.80
20079--20135	22	2.5	23	80	11	73	40	15	8	35	1.79
22643--22724	41	2.0	41	86	9	114	39	8	19	32	1.82
24050--24137	43	2.0	43	97	0	167	30	17	21	30	1.96
24328--24373	20	2.3	20	84	0	56	32	4	52	10	1.56
24450--24547	27	3.6	27	93	4	153	46	24	6	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28923--28968	20	2.3	20	84	0	56	32	4	52	10	1.56
29045--29115	27	2.6	27	88	6	99	46	23	7	22	1.76
30913--30943	15	2.1	15	100	0	62	32	6	25	35	1.82
33720--33744	2	12.5	2	100	0	50	0	0	48	52	1.00
43936--44014	27	2.9	27	90	1	113	30	30	13	25	1.94
43948--44034	28	3.1	27	85	8	102	32	32	13	21	1.93
43971--44492	28	18.6	28	83	3	559	30	28	17	23	1.97
43955--54712	56	189.9	56	79	7	9816	31	27	16	24	1.97
44018--54712	84	125.9	84	81	6	10554	31	27	16	24	1.97
44493--44923	28	15.4	28	84	6	525	31	29	16	23	1.96
44885--44962	39	2.0	39	92	0	129	26	30	21	20	1.98
44924--45355	28	15.4	28	80	4	442	30	28	16	24	1.97
45317--45394	39	2.0	39	92	0	129	26	28	21	23	1.99
45367--47168	28	64.0	28	82	5	1897	31	27	16	24	1.96
47130--47207	39	2.0	39	94	0	138	26	26	21	24	1.99
47180--48979	28	64.0	28	82	5	1879	31	27	16	24	1.96
48941--49018	39	2.0	39	92	0	129	26	25	21	25	2.00
48991--50764	28	63.0	28	81	5	1816	31	27	16	25	1.96
50726--50803	39	2.0	39	94	0	138	26	26	21	24	1.99
50776--54712	28	139.6	28	82	4	4006	31	27	16	24	1.97
54869--54943	25	3.2	25	66	14	68	21	26	18	33	1.96
54830--55037	48	4.4	47	90	1	260	21	25	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54851--54919	21	3.0	22	68	15	68	23	27	15	33	1.95
54860--55037	48	3.8	48	92	1	270	20	26	18	34	1.95
55689--55853	40	3.8	40	78	17	179	30	15	12	40	1.85
55678--55904	91	2.5	92	94	1	395	29	16	11	42	1.83
55689--55856	20	7.8	20	75	18	135	30	16	12	41	1.85
55863--55904	20	2.0	20	90	4	66	30	16	9	42	1.80
59549--59601	22	2.3	23	90	3	81	41	16	5	35	1.73
61005--61086	41	2.0	41	88	4	121	37	8	19	34	1.82
64813--64843	15	2.1	15	100	0	62	32	6	25	35	1.82
66519--66588	24	2.8	25	89	6	99	44	25	8	21	1.80
66573--66643	27	2.6	27	86	6	90	47	23	5	22	1.72
71113--71182	24	2.8	25	87	6	90	44	24	8	22	1.81
71172--71237	27	2.4	27	90	7	98	46	22	7	22	1.77
71115--71240	24	4.9	24	75	12	83	46	24	7	22	1.77

Tables:   1

The End!