genome.fa.s1528.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1528
Parameters: 2 7 7 80 10 50 1000
Length:  21884

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--115	16	1.9	16	93	0	53	29	35	0	35	1.58
6395--7191	32	25.1	31	79	12	520	21	31	14	32	1.94
6400--6826	62	6.9	62	88	4	603	23	28	16	30	1.97
6713--7258	34	16.8	33	79	11	477	20	32	13	33	1.91
6869--6989	27	4.2	27	80	13	143	19	37	13	29	1.90
6796--7223	61	6.5	63	86	8	515	19	34	12	33	1.89
6713--7253	100	5.5	97	78	11	470	20	33	13	32	1.91
7262--7371	33	3.5	31	84	7	141	27	32	17	22	1.96
7268--7364	33	3.0	33	92	3	160	27	31	18	21	1.97
7364--8123	43	16.1	49	79	11	786	25	25	17	31	1.97
7410--7477	22	3.1	21	66	26	52	26	25	17	30	1.97
7364--8114	92	8.0	92	88	5	1067	25	25	18	31	1.97
7913--8114	52	3.9	52	94	0	350	22	25	17	34	1.96
13081--13209	52	2.5	52	97	0	240	29	17	18	34	1.94
13081--13229	52	2.9	51	91	4	228	30	16	18	33	1.94
13218--13242	13	1.9	13	100	0	50	36	16	16	32	1.90
13285--13382	19	5.8	18	71	28	90	36	17	12	33	1.87
13304--13360	13	3.9	13	76	24	60	33	17	14	35	1.90
13283--13380	32	3.0	32	96	1	178	35	17	12	34	1.87
14310--15195	49	18.7	49	80	10	938	31	17	25	25	1.97
14353--15200	184	4.5	185	84	7	913	31	17	25	25	1.97
14550--15200	92	7.1	92	87	4	830	30	17	26	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15195--15362	32	5.2	33	89	5	256	18	17	35	27	1.94
15188--15362	63	2.8	63	88	6	264	17	17	36	28	1.93
15364--15791	33	12.9	33	74	12	260	33	13	33	19	1.91
15369--15791	100	4.3	100	87	5	531	32	13	33	20	1.91
15631--15812	27	6.0	28	78	14	127	33	14	32	19	1.92
15658--15789	34	3.9	33	81	5	158	37	13	31	18	1.89
15658--15789	67	2.0	67	85	5	178	37	13	31	18	1.89
15793--15975	32	5.9	30	79	11	181	30	16	28	24	1.97
15793--15974	64	2.9	61	82	8	208	29	17	29	24	1.97
15569--15888	128	2.5	127	82	8	350	33	15	31	20	1.93
16913--16979	29	2.4	29	83	13	88	1	8	7	82	0.92
20965--20989	13	1.9	13	100	0	50	36	16	16	32	1.90
21083--21201	52	2.3	52	97	0	220	35	17	17	29	1.93

Tables:   1

The End!