Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1540
Parameters: 2 7 7 80 10 50 1000
Length:  198670

Tables:   1   2   

This is table  2  of  2  ( 146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148738--148797
14
4.4
14
89
2
95
28
5
33
33
1.79
149790--149845
22
2.4
24
82
8
80
7
7
7
78
1.09
151003--151042
20
2.0
20
85
0
53
32
20
12
35
1.90
151030--151068
20
2.0
20
89
0
60
38
20
10
30
1.86
151098--151151
19
2.8
20
85
2
74
37
16
16
29
1.91
151588--151827
127
1.9
127
96
0
444
36
17
10
36
1.84
151823--151878
22
2.5
22
97
0
103
23
37
3
35
1.72
152707--153631
316
2.9
316
94
0
1652
24
17
28
28
1.98
154232--154271
22
1.9
19
85
14
53
50
0
20
30
1.49
160524--160576
19
2.7
21
88
8
76
41
16
15
26
1.88
166975--167000
13
2.0
13
100
0
52
30
15
15
38
1.88
167667--167711
21
2.1
22
95
4
83
35
31
0
33
1.58
167708--167759
17
3.1
17
97
0
95
23
21
7
48
1.75
173870--173895
13
2.0
13
100
0
52
38
15
15
30
1.88
176250--176275
13
2.0
13
100
0
52
30
15
15
38
1.88
176230--176293
32
2.0
33
90
3
103
28
14
15
42
1.86
176995--177038
21
2.1
21
83
8
54
25
31
2
40
1.68
178832--178868
13
2.8
13
95
0
65
37
16
16
29
1.90
180944--180979
15
2.3
15
90
4
54
16
19
13
50
1.79
185037--185088
19
2.7
20
87
6
79
28
13
15
42
1.85
186928--186953
13
2.0
13
100
0
52
30
15
15
38
1.88
187035--187098
33
1.9
33
84
6
85
29
17
18
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187831--187881
20
2.5
20
90
6
77
33
15
13
37
1.87
187913--187965
19
2.8
19
91
0
79
41
15
15
28
1.87
188558--188599
22
1.9
22
90
0
66
21
33
4
40
1.74
195750--195799
19
2.5
21
78
15
61
30
10
18
42
1.82

Tables:   1   2

The End!