Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1559
Parameters: 2 7 7 80 10 50 1000
Length:  258979

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235469--236091
168
3.6
168
88
8
934
30
50
4
14
1.62
235844--235869
6
4.3
6
100
0
52
30
69
0
0
0.89
235622--236223
240
2.5
240
96
0
1096
30
51
4
12
1.60
235790--236265
60
7.6
68
79
15
310
31
52
4
11
1.59
236084--236109
6
4.3
6
100
0
52
30
69
0
0
0.89
235622--236265
126
5.3
123
79
16
571
30
51
4
12
1.60
236030--236265
60
3.6
66
85
10
313
31
52
4
11
1.57
237365--237408
21
2.0
21
86
4
61
72
0
2
25
0.96
238181--238213
16
2.0
17
88
5
50
30
24
12
33
1.91
240628--240682
28
2.0
27
82
3
65
38
0
0
61
0.96
240653--240692
17
2.2
19
91
8
66
30
0
0
70
0.88
241975--242045
25
3.0
24
75
13
69
35
0
1
63
1.03
241980--242048
20
3.5
19
75
16
68
31
0
1
66
1.00
243630--243678
25
2.0
25
88
8
73
51
4
4
40
1.40
243631--243686
25
2.3
25
81
9
71
55
1
3
39
1.28
244221--244317
6
14.6
7
66
25
59
44
0
2
53
1.12
244225--244314
20
4.8
20
67
27
56
45
0
2
52
1.13
244208--244311
37
2.9
35
79
13
97
43
0
1
53
1.18
244507--244538
2
16.0
2
100
0
64
50
0
0
50
1.00
245675--245724
17
2.9
18
88
11
63
72
0
0
28
0.86
245677--245722
22
2.1
22
84
8
58
69
0
0
30
0.89
245742--245783
20
2.3
19
80
15
52
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245779--245818
13
3.2
13
74
25
50
62
0
0
37
0.95
245761--245818
24
2.2
27
88
11
86
58
0
0
41
0.98
246068--246095
2
14.0
2
100
0
56
50
0
0
50
1.00
246525--246745
34
6.5
33
80
9
248
42
26
6
24
1.79
246527--246745
68
3.2
67
84
3
278
42
26
6
25
1.80
246525--246745
102
2.2
101
87
1
334
42
26
6
24
1.79
251118--251336
34
6.5
33
81
8
235
41
25
7
26
1.81
251120--251334
68
3.2
67
83
3
261
40
25
7
26
1.81
251118--251336
102
2.2
101
85
3
314
41
25
7
26
1.81
252841--252937
16
6.1
16
65
18
51
45
0
0
54
0.99
252833--252901
22
3.2
21
75
6
59
40
0
1
57
1.07
253619--253668
2
25.0
2
100
0
100
50
0
0
50
1.00
253755--253801
3
15.3
3
91
4
76
63
0
2
34
1.06
253966--254008
20
2.1
21
91
4
70
62
4
2
30
1.28
253974--254018
20
2.2
20
84
0
54
60
6
2
31
1.35
255142--255170
3
9.7
3
100
0
58
65
0
34
0
0.93

Tables:   1   2   3

The End!