genome.fa.s1591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1591
Parameters: 2 7 7 80 10 50 1000
Length:  32388

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6731--6916	79	2.4	79	80	5	207	34	13	24	27	1.93
6849--6967	51	2.3	51	88	0	166	28	12	30	28	1.93
6950--7023	28	2.6	28	89	4	114	24	22	31	21	1.99
6849--7153	158	1.9	158	82	1	378	30	13	27	28	1.94
7006--7121	51	2.3	51	83	3	153	31	10	26	31	1.90
6999--7315	130	2.4	130	82	1	402	35	11	24	28	1.90
9716--9745	13	2.3	13	94	0	51	40	10	16	33	1.82
10512--10610	46	2.2	42	85	8	126	46	12	24	17	1.81
10638--10963	61	5.5	61	79	10	301	28	20	26	24	1.99
10982--11209	55	4.1	55	79	6	232	22	23	25	27	2.00
10821--11107	149	1.9	149	84	2	380	26	20	27	26	1.99
11009--11209	110	1.8	110	85	6	282	23	23	24	27	2.00
10981--11209	110	2.1	110	82	4	275	23	23	25	27	2.00
11667--11721	20	2.8	20	82	0	74	45	10	12	30	1.77
12305--12404	40	2.5	40	80	6	103	46	12	24	18	1.82
12597--12902	61	5.1	61	76	10	265	29	20	26	24	1.99
12610--12842	122	1.9	122	82	5	292	28	22	24	24	1.99
12789--12923	55	2.5	55	81	0	180	25	20	25	28	1.99
12850--13021	94	1.8	95	84	3	240	26	19	26	26	1.99
12942--13181	55	4.4	55	82	2	250	23	21	26	27	1.99
12780--13075	149	2.0	149	86	1	414	27	19	27	26	1.99
12730--13134	204	2.0	207	82	5	507	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14314--14467	42	3.6	43	74	12	109	42	11	27	18	1.84
14346--14492	45	3.5	43	79	12	139	36	14	26	23	1.93
14457--14838	61	6.4	59	82	8	391	28	20	26	24	1.99
14474--14838	122	3.0	120	80	9	440	27	20	26	25	1.99
14647--14822	55	3.1	55	85	10	246	27	20	26	25	1.99
14464--14822	116	3.0	115	82	7	434	27	20	27	25	1.99
14867--15055	55	3.4	55	87	1	254	23	21	26	28	1.99
16115--16162	11	4.5	11	76	12	55	0	12	2	85	0.69
16115--16157	20	2.1	21	86	4	61	0	11	2	86	0.67
18875--18923	27	1.9	26	84	12	66	24	38	18	18	1.93
25003--25133	31	4.3	31	80	3	133	27	29	15	27	1.96
25003--25133	30	4.3	31	80	9	144	27	29	15	27	1.96
25003--25137	61	2.2	61	83	7	159	28	29	14	27	1.95
25122--25214	34	2.9	35	74	21	103	23	33	12	30	1.92
25154--25236	28	3.0	28	89	3	123	25	33	14	26	1.94
25279--26178	49	18.6	49	78	10	892	23	25	18	32	1.97
25467--26178	101	7.2	101	87	5	1042	23	25	18	32	1.97
25279--26178	202	4.7	192	85	6	1111	23	25	18	32	1.97
26067--26191	49	2.5	49	84	6	144	21	27	20	30	1.98
28474--28627	42	3.6	43	74	12	109	42	11	27	18	1.84
28462--28626	45	3.8	42	76	12	131	40	13	26	20	1.89
28665--28899	61	3.8	60	79	9	235	29	22	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28665--28898	122	1.9	122	83	5	303	29	22	23	24	1.99
28850--28979	55	2.4	55	89	0	206	24	20	24	30	1.99
28836--29130	148	2.0	149	91	2	486	27	20	26	26	1.99
28997--29229	55	4.3	55	87	3	303	23	23	24	28	1.99
28786--29186	203	1.9	207	87	4	587	26	21	25	26	1.99
29097--29181	28	3.1	28	60	3	64	24	23	22	29	1.99
28729--29341	258	2.3	264	83	7	758	27	20	25	26	1.99
29628--29683	20	2.8	19	91	5	85	44	12	14	28	1.81
30432--30531	45	2.3	43	79	10	112	46	11	25	18	1.81
30565--30859	61	4.9	62	77	8	251	26	20	26	26	1.99
30567--30800	122	1.9	122	82	3	292	26	21	25	26	1.99
32064--32353	61	4.9	60	80	7	256	26	21	26	25	1.99

Tables:   1

The End!