genome.fa.s1618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1618
Parameters: 2 7 7 80 10 50 1000
Length:  97438

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7031--7993	43	22.6	42	69	10	265	34	17	28	18	1.94
7031--7991	128	7.5	127	77	8	608	34	17	28	18	1.94
7037--7993	256	3.7	255	78	7	915	35	17	29	18	1.94
7037--8011	86	11.4	85	77	9	663	35	17	29	18	1.94
11433--11458	13	2.0	13	100	0	52	38	15	15	30	1.88
11415--11481	33	2.1	32	91	2	107	38	19	14	26	1.91
17447--17477	13	2.4	13	94	0	53	16	0	22	61	1.34
17638--17663	13	2.0	13	100	0	52	30	15	15	38	1.88
24505--24571	33	2.0	33	85	0	89	32	10	14	41	1.80
24612--24636	13	1.9	13	100	0	50	32	16	16	36	1.90
24645--24773	52	2.5	52	94	0	222	34	17	17	29	1.94
30096--30155	20	3.1	20	83	13	81	81	18	0	0	0.69
30101--30156	29	2.0	29	96	3	105	83	16	0	0	0.64
30100--30170	10	6.9	10	79	10	72	81	16	1	0	0.76
31864--31926	13	4.8	13	71	19	51	34	12	19	33	1.89
31946--32262	28	11.3	28	86	3	413	29	29	17	23	1.97
32279--32389	32	3.7	31	81	9	124	29	27	16	27	1.97
33371--33409	20	1.9	21	94	5	71	28	17	10	43	1.82
33302--33457	71	2.2	70	80	3	168	31	16	9	42	1.80
34661--34762	50	2.0	48	80	14	109	32	15	12	39	1.85
40439--40490	24	2.1	24	82	10	61	78	13	3	3	1.02
40452--40490	12	3.2	13	85	10	55	84	15	0	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40452--40490	11	3.4	11	89	7	51	84	15	0	0	0.62
40730--40763	12	2.8	12	86	4	50	88	8	2	0	0.62
41759--42039	30	9.3	30	79	6	237	22	28	15	33	1.95
41765--41971	61	3.4	61	87	2	290	23	28	16	31	1.96
41985--42038	27	2.0	27	92	0	90	25	33	14	25	1.95
41961--42628	61	10.7	59	71	16	270	21	30	12	36	1.90
41961--43434	94	15.6	93	76	12	941	20	29	12	36	1.90
42007--43427	33	44.9	33	72	15	936	20	29	12	37	1.89
42081--42134	27	2.0	27	85	0	72	25	31	12	29	1.93
41961--43377	60	22.5	61	73	14	485	20	29	12	36	1.90
41973--42651	189	3.6	188	83	3	873	21	30	11	36	1.89
42546--42598	27	2.0	27	84	0	70	24	26	13	35	1.92
42478--42778	160	1.9	161	84	3	410	20	30	11	37	1.88
42706--42759	27	2.0	27	88	0	81	22	35	14	27	1.93
42895--43000	27	3.7	27	72	14	77	20	30	12	36	1.89
42137--43377	155	7.9	155	74	15	556	20	29	12	37	1.90
43424--44259	49	17.8	49	74	11	549	25	25	16	31	1.97
43632--43870	39	5.7	39	71	16	172	27	25	19	27	1.99
43575--44017	87	5.0	87	83	7	501	26	25	18	30	1.98
45030--45083	19	2.7	19	82	5	63	42	14	14	27	1.85
49224--49287	20	3.5	20	72	27	79	32	12	15	39	1.85
49242--49300	13	5.0	13	71	23	58	35	13	15	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49224--49320	33	3.0	33	93	1	160	32	13	16	37	1.88
49352--49404	20	2.6	21	84	3	72	28	16	15	39	1.89
49392--49422	13	2.4	13	100	0	62	38	12	16	32	1.86
49406--49456	20	2.5	20	81	6	59	35	13	13	37	1.85
51889--51913	13	1.9	13	100	0	50	36	16	16	32	1.90
58089--58154	20	3.7	20	73	26	83	33	12	15	39	1.84
58087--58168	33	2.5	33	100	0	164	34	13	14	37	1.85
58109--58167	13	5.0	13	71	23	58	35	13	15	35	1.87
58219--58266	21	2.3	21	82	3	62	25	16	16	41	1.89
59409--59859	224	2.0	224	92	0	742	24	22	15	37	1.93
70308--70420	53	2.1	53	79	6	120	38	23	15	23	1.92
70413--70490	32	2.4	32	79	12	81	46	24	14	15	1.83
71018--71294	148	1.9	150	84	3	380	39	13	10	36	1.79
72174--72200	12	2.2	12	100	0	54	66	11	22	0	1.22
72250--72289	10	3.9	10	86	3	53	0	17	0	82	0.67
72257--72286	13	2.4	13	94	5	53	0	13	0	86	0.57
72250--72289	21	2.0	20	85	5	53	0	17	0	82	0.67
72256--72290	11	3.1	11	87	4	52	0	20	0	80	0.72
72924--73455	168	3.2	168	82	5	632	53	8	9	29	1.62
79579--79632	20	2.7	20	82	0	72	33	11	11	44	1.75
79656--79707	20	2.5	20	78	3	59	36	13	7	42	1.73
79565--79752	72	2.6	71	82	0	223	31	15	9	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79667--79785	51	2.3	51	86	2	159	31	18	10	40	1.84
79718--79755	20	1.9	20	100	0	76	31	18	10	39	1.85
79739--79815	31	2.5	31	97	0	145	25	20	11	41	1.86
79687--79786	51	2.0	51	91	0	164	29	20	9	42	1.82
82647--82677	13	2.4	13	94	0	53	35	12	16	35	1.87
82627--82693	33	2.0	33	91	5	109	34	17	14	32	1.91
82722--82794	20	3.7	19	88	3	92	35	17	16	30	1.92
83022--83063	22	1.9	22	95	0	75	30	38	2	28	1.70
91055--91085	13	2.4	13	94	0	53	35	12	16	35	1.87
91035--91105	33	2.2	33	87	5	99	30	16	16	35	1.92
91068--91120	20	2.7	20	93	0	97	30	18	16	33	1.94
92113--92366	48	5.3	48	91	0	368	35	16	27	20	1.94
92480--92861	28	14.0	28	82	7	453	23	18	29	29	1.97
92971--93163	28	6.7	28	81	8	199	30	32	15	22	1.95
93252--93380	49	2.8	46	83	6	152	21	26	20	31	1.98
94096--94148	20	2.7	20	90	0	79	33	13	15	37	1.86
94136--94213	31	2.5	32	91	2	122	26	19	11	42	1.85
94168--94264	51	1.9	51	93	0	167	25	18	12	43	1.85
94170--94283	51	2.2	51	85	3	149	28	18	12	40	1.87

Tables:   1

The End!