genome.fa.s1636.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1636
Parameters: 2 7 7 80 10 50 1000
Length:  229876

Tables:   1   2   

This is table  2  of  2  ( 161 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146318--146343	13	2.0	13	100	0	52	30	15	15	38	1.88
146298--146361	32	2.0	33	90	3	103	28	14	18	39	1.90
146402--146457	20	2.8	20	88	0	76	30	14	16	39	1.88
150983--151013	15	2.1	15	93	0	53	12	22	16	48	1.80
155052--155104	25	2.1	26	89	3	81	28	13	18	39	1.88
160134--160161	14	2.0	14	100	0	56	35	28	28	7	1.84
160816--160911	36	3.0	29	75	19	75	30	27	11	31	1.91
160816--160911	32	3.0	30	76	16	86	30	27	11	31	1.91
160842--160913	36	2.0	36	86	7	103	27	30	9	31	1.89
161441--161465	13	1.9	13	100	0	50	36	16	16	32	1.90
176891--176916	13	2.0	13	100	0	52	38	15	15	30	1.88
176873--176936	32	2.0	33	90	3	103	39	18	14	28	1.90
178536--178577	21	2.0	21	85	0	57	42	4	28	23	1.74
182478--182503	13	2.0	13	100	0	52	38	15	15	30	1.88
182460--182523	32	2.0	33	90	3	103	39	18	14	28	1.90
185900--185968	19	3.6	19	88	0	111	27	11	14	46	1.79
185900--185988	38	2.3	38	86	1	124	29	11	15	43	1.81
187441--187482	13	3.2	13	75	18	50	40	9	14	35	1.78
190012--190251	97	2.5	96	92	1	381	28	13	29	28	1.94
192458--192523	20	3.3	20	72	8	71	48	15	7	28	1.72
193202--193333	48	2.8	48	90	0	201	34	18	27	19	1.95
193444--193668	28	7.8	29	82	8	230	25	17	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199799--200036	97	2.5	97	84	0	305	30	13	28	27	1.94
202179--202347	20	7.8	20	69	19	99	42	13	14	30	1.84
202151--202307	52	3.3	50	70	20	145	42	12	15	29	1.84
202151--202347	92	2.1	92	91	1	324	42	13	14	29	1.84
208223--208257	15	2.3	15	95	0	61	28	28	0	42	1.56
210530--210561	14	2.3	14	94	0	55	28	21	9	40	1.84
210555--210594	13	3.1	13	88	0	62	32	15	15	37	1.88
210642--210679	20	2.0	19	85	10	51	36	10	18	34	1.85
213123--213194	27	2.7	27	97	0	135	31	36	8	23	1.85
214828--215151	167	1.9	166	90	4	510	50	9	8	30	1.66
214828--215193	167	2.2	166	85	5	463	50	10	9	29	1.67
215208--216103	47	19.0	46	77	9	624	37	15	21	25	1.93
215213--216103	93	9.4	93	76	6	675	37	15	21	25	1.93
215214--216103	236	3.8	235	80	5	804	37	15	21	25	1.93
215198--216172	285	3.5	280	83	4	1113	37	15	21	25	1.93
216017--216144	49	2.6	49	82	3	125	33	17	18	29	1.95
218088--218148	20	3.0	20	82	0	77	31	14	14	39	1.87
218111--218168	20	2.8	20	86	7	71	31	20	12	36	1.89
229730--229803	20	3.7	20	79	0	94	43	10	13	32	1.79

Tables:   1   2

The End!