genome.fa.s1638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1638
Parameters: 2 7 7 80 10 50 1000
Length:  110338

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2053--2102	25	2.1	24	85	7	66	64	2	0	34	1.05
2514--2560	10	4.7	10	82	7	51	42	0	0	57	0.98
2512--2551	21	2.0	21	90	5	64	40	0	0	60	0.97
2632--2692	15	4.3	14	82	14	54	32	0	1	65	1.02
3428--3462	18	1.9	18	88	11	54	65	0	0	34	0.93
4565--4602	15	2.4	17	82	8	53	42	2	0	55	1.14
5068--5117	16	3.1	16	77	8	57	32	0	2	66	1.03
5078--5184	16	6.8	16	74	13	69	33	0	6	59	1.23
5078--5184	31	3.4	31	80	7	117	33	0	6	59	1.23
6248--6337	47	1.9	47	97	0	171	41	18	1	38	1.58
11974--12027	20	2.8	19	91	8	83	50	7	1	40	1.41
11976--12012	2	18.5	2	94	0	56	51	5	0	43	1.24
14512--14575	30	2.2	30	83	8	78	37	7	4	50	1.52
15625--15677	27	2.0	25	85	7	70	45	1	0	52	1.11
16791--16919	16	8.2	16	77	10	124	57	0	0	41	1.04
16823--16913	28	3.0	29	73	20	71	57	1	0	41	1.06
16808--16919	44	2.4	45	85	10	147	58	0	0	40	1.04
18629--18667	18	2.2	17	90	9	60	35	0	0	64	0.94
19500--19688	102	1.9	101	84	1	252	49	6	6	37	1.54
20189--20226	16	2.3	17	90	4	60	47	0	0	52	1.00
26359--26408	19	2.6	19	100	0	100	38	20	12	30	1.88
27825--27900	38	2.0	38	89	0	116	30	7	25	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28485--28525	15	2.7	15	80	0	55	31	9	12	46	1.74
31283--31396	48	2.3	51	83	10	139	35	8	26	28	1.86
33904--33955	20	2.5	21	90	9	81	50	11	11	26	1.73
33948--33986	19	2.1	19	90	0	60	25	17	15	41	1.89
34003--34058	21	2.7	21	80	5	69	26	12	16	44	1.83
34634--34782	34	4.3	34	75	15	128	40	12	26	21	1.88
34650--34823	75	2.3	74	80	9	201	39	13	26	21	1.90
34755--34878	43	2.9	43	85	4	153	40	12	28	19	1.87
35008--35873	62	14.1	62	81	6	781	31	18	24	25	1.98
37154--37191	18	2.2	18	85	4	51	2	15	13	68	1.32
42009--42359	76	4.6	76	82	7	410	33	11	25	28	1.92
42150--42211	28	2.2	29	82	8	74	38	11	25	24	1.88
42009--42328	153	2.1	150	84	4	419	34	11	24	29	1.91
42225--42288	28	2.3	28	70	5	67	35	10	28	25	1.89
50568--50623	27	2.1	26	86	3	76	55	1	0	42	1.10
50614--50662	18	2.7	18	84	9	55	51	2	0	46	1.12
55503--55541	20	2.0	20	100	0	78	30	10	17	41	1.83
55620--55644	13	1.9	13	100	0	50	32	16	16	36	1.90
55599--55663	32	2.0	33	90	3	105	30	15	15	38	1.88
57327--57364	3	12.7	3	94	0	67	36	0	34	28	1.58
62810--62884	20	3.8	20	80	0	96	33	12	13	41	1.81
62810--62887	40	2.0	39	89	2	120	33	11	14	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78106--78935	28	28.9	29	86	4	1010	28	30	17	23	1.97
78103--78935	86	9.7	86	87	3	1049	27	31	17	23	1.97
79498--79569	20	3.6	20	76	0	81	34	13	11	40	1.81
79495--79572	40	2.0	39	89	2	120	34	12	12	39	1.82
83820--83854	17	2.1	17	94	0	61	45	11	8	34	1.71
84744--84814	20	3.6	19	77	7	70	36	16	14	32	1.89
84803--84840	20	2.1	18	85	14	51	44	15	15	23	1.85
87555--87612	29	2.0	30	82	3	73	70	6	10	12	1.33
92090--92399	154	2.0	154	94	0	548	43	7	14	35	1.73
92572--92600	13	2.3	13	94	5	51	44	3	0	51	1.18
95821--95852	6	5.2	6	92	7	55	46	0	0	53	1.00
96919--96960	15	2.9	15	82	3	50	47	2	0	50	1.14
97692--97744	27	1.9	28	84	3	72	58	0	1	39	1.09
97756--97816	16	3.7	17	76	12	56	52	0	1	45	1.10
97985--98083	28	3.4	27	75	18	85	46	0	0	53	1.00
98000--98083	32	2.9	29	76	20	95	46	0	0	53	1.00
100821--100860	20	2.0	21	90	5	64	80	0	12	7	0.91
102722--102775	20	2.8	20	82	2	65	48	0	5	46	1.25

Tables:   1

The End!