Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1642
Parameters: 2 7 7 80 10 50 1000
Length:  43209

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1619--1654
2
18.5
2
94
5
65
50
0
50
0
1.00
4619--4675
2
28.5
2
96
0
105
49
1
49
0
1.11
6689--6720
2
16.0
2
100
0
64
50
0
0
50
1.00
6986--7015
2
15.0
2
100
0
60
0
0
50
50
1.00
7426--7464
2
19.5
2
100
0
78
51
0
0
48
1.00
8839--8932
43
2.2
43
85
11
122
45
0
2
52
1.12
8877--8914
19
2.0
20
85
15
53
42
0
2
55
1.14
9376--9418
2
22.0
2
90
4
70
0
53
0
46
1.00
12117--12154
2
19.0
2
100
0
76
50
0
50
0
1.00
12819--12864
24
1.9
24
100
0
92
39
13
8
39
1.75
15505--15549
21
2.2
20
84
4
54
57
0
8
33
1.30
16465--16505
16
2.6
16
84
0
55
56
2
0
41
1.13
16967--17010
20
2.2
20
88
8
63
54
2
0
43
1.12
17633--17696
18
3.6
18
74
2
58
45
0
1
53
1.10
17690--17725
13
2.8
13
82
0
54
30
2
0
66
1.06
17686--17743
29
2.0
28
83
3
71
32
3
1
62
1.22
17755--17779
13
1.9
13
100
0
50
40
4
0
56
1.18
18654--18694
2
20.5
2
100
0
82
51
0
0
48
1.00
22696--22736
2
20.5
2
94
0
73
51
2
0
46
1.14
23415--23451
2
18.5
2
100
0
74
0
48
0
51
1.00
23451--23478
2
14.0
2
100
0
56
50
0
0
50
1.00
23828--23863
5
7.6
5
96
3
58
44
13
0
41
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23828--23875
15
3.6
14
88
8
57
43
10
0
45
1.38
28248--28279
2
16.0
2
100
0
64
50
0
0
50
1.00
31425--31524
50
2.0
50
96
0
182
24
23
17
36
1.95
33922--33961
2
20.0
2
100
0
80
0
50
0
50
1.00
38049--38089
20
2.0
20
85
0
55
29
14
4
51
1.63
38178--38206
2
14.5
2
100
0
58
0
48
0
51
1.00
38206--38234
2
14.5
2
100
0
58
48
0
0
51
1.00
38672--38767
48
2.0
48
97
0
183
42
11
4
41
1.60
39570--39599
7
4.3
7
95
0
51
0
3
10
86
0.67
41890--41936
3
15.3
3
95
4
85
63
2
0
34
1.06
42308--42350
3
14.3
3
100
0
86
32
0
0
67
0.91

Tables:   1

The End!