genome.fa.s1651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1651
Parameters: 2 7 7 80 10 50 1000
Length:  43206

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140--217	1	78.0	1	71	0	57	85	14	0	0	0.59
141--217	24	3.3	23	79	15	88	85	14	0	0	0.59
145--217	32	2.2	33	92	2	121	84	15	0	0	0.61
146--217	11	6.7	11	76	12	78	84	15	0	0	0.62
456--487	17	1.9	17	93	6	57	84	9	6	0	0.78
1455--1595	31	4.5	31	85	10	191	24	31	19	25	1.98
1455--1614	62	2.6	63	85	8	206	23	30	17	28	1.97
1455--1637	93	2.0	94	81	7	221	22	30	16	30	1.96
1575--1909	34	10.3	33	73	15	243	21	32	12	33	1.91
1573--1763	70	2.8	69	87	4	257	21	31	13	33	1.92
1680--1851	86	2.0	87	93	2	292	20	33	13	32	1.92
1774--1909	71	1.9	71	89	4	213	20	34	12	32	1.90
1930--5404	49	70.7	49	84	2	4468	25	26	17	30	1.97
1930--5404	98	35.4	98	93	2	5827	25	26	17	30	1.97
1930--5399	590	5.9	590	95	1	6105	25	26	17	30	1.97
5220--5409	43	4.1	43	75	18	191	25	25	17	31	1.97
5262--5452	49	3.6	53	82	6	194	25	25	15	32	1.95
6512--7350	420	2.0	420	91	0	1356	30	20	14	35	1.91
6929--8038	476	2.3	476	90	0	1729	29	21	14	34	1.93
8284--8350	33	2.0	33	88	0	98	34	11	13	40	1.81
8304--8328	13	1.9	13	100	0	50	36	16	16	32	1.90
8424--8543	52	2.3	52	94	1	206	34	17	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11191--28840	476	37.1	476	93	1	30338	29	21	14	35	1.92
11191--28840	950	18.6	952	96	0	30338	29	21	14	35	1.92
28445--29235	395	2.0	395	90	0	1251	29	22	13	34	1.92
28840--33984	475	10.8	476	92	0	8241	29	21	13	34	1.92
28840--33984	949	5.4	950	92	1	8200	29	21	13	34	1.92
30668--32298	159	10.3	159	63	14	434	30	21	13	34	1.92
33589--34379	395	2.0	395	92	0	1323	30	22	13	33	1.92
33984--36754	476	5.8	475	92	1	4419	29	21	13	34	1.92
36754--40005	476	6.8	474	90	1	5034	29	21	13	34	1.92
40004--42749	474	5.8	475	89	3	4112	29	21	13	34	1.92

Tables:   1

The End!