genome.fa.s1662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1662
Parameters: 2 7 7 80 10 50 1000
Length:  87690

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581--612	15	2.1	15	100	0	64	43	18	25	12	1.85
4691--4801	1	111.0	1	78	0	87	86	8	3	1	0.75
4694--4801	29	3.6	29	82	10	114	86	8	3	1	0.77
4691--4801	42	2.5	45	84	10	140	86	8	3	1	0.75
6236--6545	30	10.6	30	84	6	370	31	26	16	24	1.96
6236--6558	146	2.2	146	85	6	415	30	26	17	25	1.97
6236--6545	57	5.3	57	84	7	340	31	26	16	24	1.96
6549--6760	52	4.2	52	76	13	208	24	25	16	33	1.96
6564--6653	43	2.1	43	93	0	153	26	24	17	31	1.97
6607--6989	67	6.7	55	73	14	280	24	24	14	37	1.93
6607--7001	171	2.3	171	93	1	664	24	24	14	36	1.93
8256--8280	13	1.9	13	100	0	50	36	16	16	32	1.90
8343--8367	13	1.9	13	100	0	50	32	16	16	36	1.90
8376--8556	52	3.5	52	97	0	335	34	18	17	28	1.94
14880--14982	1	103.0	1	77	0	80	86	9	2	0	0.72
14882--14967	33	2.7	32	87	10	122	87	11	1	0	0.61
14880--14987	47	2.4	45	84	6	128	84	11	3	0	0.80
14876--14960	8	10.2	8	82	9	100	87	12	0	0	0.56
14880--14982	16	6.4	15	78	15	91	86	9	2	0	0.72
14876--14985	22	4.9	22	81	7	105	85	10	3	0	0.76
15954--16291	61	5.6	61	88	1	477	25	25	18	30	1.98
16358--16714	44	8.3	44	71	14	221	20	24	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16376--16538	85	2.0	82	84	6	211	20	26	13	39	1.89
16394--16600	82	2.5	83	80	10	224	20	26	13	39	1.90
16394--16624	126	1.9	122	79	13	265	20	25	12	40	1.88
16515--16797	44	6.6	44	72	11	203	20	23	12	43	1.86
16642--16800	82	2.0	81	83	2	203	22	23	11	42	1.85
19661--20008	79	4.4	79	84	1	432	29	24	12	33	1.92
27487--27582	20	4.8	20	81	8	115	35	13	16	34	1.88
28317--28935	52	11.8	52	71	7	383	34	15	24	25	1.95
28212--28833	266	2.3	268	80	6	670	33	14	25	26	1.95
28924--29023	31	3.2	31	82	2	130	20	18	34	28	1.95
29219--29277	28	2.1	28	83	0	73	27	18	28	25	1.98
29438--29482	22	2.0	22	100	0	90	31	26	20	22	1.98
30609--30636	10	2.8	10	100	0	56	0	0	7	92	0.37
31924--31969	23	2.0	23	100	0	92	17	30	8	43	1.79
44648--44743	20	4.8	20	75	8	88	35	10	16	37	1.83
46789--46926	52	2.7	51	78	4	154	44	13	12	29	1.81
51196--51227	16	2.0	16	93	0	55	59	0	0	40	0.97
51489--51521	3	11.0	3	93	0	57	63	0	0	36	0.95
52549--52604	20	2.7	20	86	5	67	32	14	10	42	1.80
57859--57929	32	2.2	31	85	5	97	52	2	0	45	1.15
57859--57925	33	2.0	34	88	5	102	53	2	0	43	1.16
58167--58197	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58358--58391	4	9.0	4	87	12	54	23	0	0	76	0.79
59217--59268	23	2.4	21	78	12	52	51	9	7	30	1.62
62399--62450	20	2.7	20	93	3	88	36	11	15	36	1.84
62420--62484	32	2.0	32	90	0	103	36	10	15	36	1.82
62398--62482	19	4.7	19	75	18	83	36	10	15	37	1.82
62525--62549	13	1.9	13	100	0	50	32	16	16	36	1.90
76411--76499	12	7.6	11	80	14	90	85	12	2	0	0.69
76423--76493	6	11.3	6	82	12	65	85	14	0	0	0.59
76426--76490	8	8.2	8	85	11	82	86	13	0	0	0.58
76423--76484	31	1.9	31	90	9	97	88	11	0	0	0.51
76411--76484	1	74.0	1	78	0	67	87	9	2	0	0.63
77936--78140	29	7.1	29	84	6	236	31	29	15	23	1.95
77940--78111	29	5.9	29	87	4	238	30	30	16	23	1.96
77940--78111	59	2.9	58	91	2	281	30	30	16	23	1.96
78145--78302	34	4.6	34	87	3	167	20	32	12	34	1.90
78297--78558	49	5.3	49	88	0	380	24	26	16	31	1.97
78297--78701	147	2.7	147	85	3	506	23	26	17	32	1.96
78297--78642	49	7.0	48	81	5	315	23	26	17	31	1.97
78629--78868	52	4.6	52	70	10	168	24	26	14	35	1.93
79494--79563	13	4.9	13	80	19	86	35	14	17	32	1.90
79472--79582	13	6.8	18	74	24	72	35	11	16	36	1.85
79507--79584	32	2.4	32	95	0	138	34	11	16	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79474--79563	45	2.0	46	95	2	164	36	13	16	33	1.88
79625--79649	13	1.9	13	100	0	50	32	16	16	36	1.90
83149--83174	13	2.0	13	100	0	52	30	15	15	38	1.88
83213--83288	20	3.8	20	79	8	73	28	15	14	40	1.87
85672--86695	1	1024.0	1	98	0	1949	1	0	98	0	0.09

Tables:   1

The End!