genome.fa.s1679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1679
Parameters: 2 7 7 80 10 50 1000
Length:  68998

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4123--4301	34	5.1	34	86	9	220	20	34	12	32	1.90
5228--5410	93	2.0	93	91	0	294	25	31	22	19	1.98
5674--5704	16	1.9	16	100	0	62	54	12	0	32	1.38
19400--19425	13	2.0	13	100	0	52	38	15	15	30	1.88
19412--19449	20	1.9	20	100	0	76	31	15	13	39	1.86
19469--19520	13	3.5	13	73	26	50	34	19	13	32	1.90
20206--20798	49	12.9	49	76	12	451	30	17	26	26	1.97
20355--20741	43	8.8	41	75	14	190	28	17	26	28	1.97
20270--20796	88	5.9	91	77	12	525	29	16	26	27	1.97
20272--20798	270	1.9	267	90	4	835	29	16	26	26	1.97
20804--22161	34	40.4	34	80	8	1484	36	11	31	20	1.89
20804--22161	66	20.2	66	85	6	1478	36	11	31	20	1.89
20804--22089	437	2.9	435	87	6	1793	36	11	31	20	1.89
22103--22325	30	7.3	30	86	7	290	33	16	30	20	1.95
23779--24546	315	2.4	314	89	3	1161	33	13	25	27	1.93
24479--24594	51	2.3	51	96	0	214	34	12	25	28	1.91
23779--24546	79	9.7	79	87	3	1084	33	13	25	27	1.93
24399--24673	130	2.1	130	90	2	444	35	13	25	25	1.93
24321--24744	209	2.0	209	93	3	721	34	13	25	26	1.93
24530--25020	79	6.2	79	89	1	727	33	14	25	26	1.94
24722--24781	28	2.0	30	84	9	79	30	11	25	33	1.91
24973--25046	27	2.8	26	87	8	96	21	20	33	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26467--26518	21	2.5	21	96	0	95	19	28	5	46	1.73
26488--26683	35	5.6	35	96	0	356	20	30	5	43	1.74
26593--26659	21	3.5	21	67	26	67	20	29	5	43	1.76
26649--26678	14	2.2	13	94	5	51	20	33	6	40	1.78
27149--27252	42	2.5	41	80	13	115	44	11	28	15	1.81
27148--27369	41	5.5	41	69	20	119	43	13	24	18	1.86
27561--27649	26	3.3	26	66	14	72	24	19	29	26	1.98
27586--27674	29	3.2	29	63	15	78	25	20	26	26	1.99
27385--27952	61	9.4	61	85	5	737	27	19	27	25	1.99
35402--35530	52	2.5	52	98	0	249	27	18	18	34	1.95
35539--35563	13	1.9	13	100	0	50	36	16	16	32	1.90
35606--35690	19	4.7	19	79	18	101	37	17	11	32	1.86
35644--35668	13	1.9	13	100	0	50	32	16	16	36	1.90
35625--35688	32	2.0	33	96	3	121	34	18	12	34	1.89
36311--36492	55	3.4	52	78	4	168	34	15	24	25	1.94
36311--36514	53	3.8	52	78	4	158	35	14	24	25	1.94
36455--36581	67	1.9	68	85	1	175	37	11	25	24	1.90
36589--36865	92	3.0	92	91	1	428	32	17	24	26	1.97
36752--36819	22	3.1	21	66	26	52	30	16	25	27	1.96
36731--36798	21	3.2	20	66	25	50	29	16	26	27	1.97
36536--36865	43	6.8	49	79	10	308	32	16	24	26	1.96
36858--36917	30	2.0	30	90	6	95	16	18	35	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36886--37135	59	4.3	59	88	4	371	22	16	32	30	1.95
36886--37135	29	8.5	29	82	4	297	22	16	32	30	1.95
38559--38594	18	2.1	18	89	5	56	2	0	13	83	0.76
53625--54280	79	8.3	79	89	1	976	32	15	26	25	1.95
54232--54303	27	2.6	28	88	2	101	20	20	34	23	1.96
55727--55848	21	6.5	21	68	24	101	19	30	5	44	1.74
55748--55943	35	5.6	35	97	0	365	19	31	6	42	1.76
59732--59885	52	2.9	53	82	10	165	34	12	25	27	1.92
59802--59929	51	2.5	52	84	1	159	34	12	25	28	1.92
59914--59987	27	2.8	28	89	6	109	22	18	33	24	1.97
62470--62494	13	1.9	13	100	0	50	32	16	20	32	1.94
62450--62514	33	2.0	33	87	0	94	40	16	16	26	1.90
63313--64100	59	13.9	55	88	6	805	24	21	28	25	1.99
63447--63540	47	2.0	47	93	4	163	18	21	29	30	1.97
63337--63646	157	2.0	157	91	2	507	20	21	30	27	1.98
63494--64124	59	10.9	59	92	2	824	25	21	28	25	1.99

Tables:   1

The End!