genome.fa.s1684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1684
Parameters: 2 7 7 80 10 50 1000
Length:  14501

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1202	32	37.9	31	70	12	407	28	18	22	30	1.97
14--754	63	11.7	63	73	8	321	28	18	22	30	1.97
1--903	95	9.4	95	74	10	315	28	18	22	30	1.97
1--1202	127	9.5	127	73	7	726	28	18	22	30	1.97
739--815	40	1.9	40	86	5	111	27	18	19	35	1.95
782--988	94	2.2	94	78	6	213	29	20	19	30	1.97
1500--1600	53	1.9	52	82	8	123	31	15	14	37	1.89
4645--5640	32	31.5	31	71	9	525	27	20	22	30	1.98
4645--5637	63	15.7	63	69	9	515	27	20	22	30	1.98
4932--12422	95	78.9	95	69	12	1056	27	19	21	30	1.98
5337--5638	118	2.5	118	81	4	300	29	21	21	27	1.99
5493--5638	30	4.9	30	74	9	138	30	21	19	28	1.97
5501--5581	27	2.8	28	77	9	74	32	19	19	28	1.97
5643--6289	32	20.6	32	75	5	500	27	19	22	30	1.98
5643--6289	63	10.3	64	75	5	493	27	19	22	30	1.98
6542--6648	31	3.5	31	83	6	110	28	25	18	27	1.98
6621--6700	40	2.0	40	82	4	99	23	16	22	37	1.93
6662--6763	31	3.3	31	79	8	100	28	15	20	35	1.93
6662--11190	32	142.8	32	72	9	2497	27	19	21	30	1.98
6858--9978	63	49.3	61	70	13	248	28	19	22	29	1.98
6845--7028	94	2.0	93	82	3	226	26	19	25	28	1.99
7179--7655	126	3.8	126	79	5	383	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7587--7719	71	1.9	71	84	3	178	24	20	22	32	1.98
7560--7755	102	1.9	103	86	1	277	27	19	22	31	1.98
8352--8857	221	2.3	221	79	4	513	28	20	22	28	1.99
8352--9219	253	3.5	252	76	8	624	29	21	21	28	1.98
8884--9062	61	2.9	61	78	11	184	32	22	17	27	1.96
7660--14181	63	102.7	62	69	11	1947	28	19	21	30	1.98
10198--10299	31	3.4	30	89	6	152	18	27	21	32	1.97
10263--10442	94	1.9	94	85	2	245	27	21	18	32	1.97
9089--10888	127	14.2	125	72	10	390	27	19	21	31	1.97
11234--13659	32	75.8	31	70	9	887	28	18	21	31	1.97
11597--11788	102	1.9	103	82	3	244	27	18	20	32	1.96
11794--12128	156	2.1	158	81	4	374	30	18	22	29	1.97
12102--12307	102	2.0	103	83	4	256	30	19	16	33	1.94
12715--12888	94	1.8	93	82	4	224	26	21	21	30	1.98
12634--12870	125	1.9	124	80	6	273	26	22	20	30	1.98
12863--13236	95	3.9	93	74	9	256	28	17	23	30	1.97
13694--14501	32	25.7	32	70	11	384	28	19	21	30	1.98

Tables:   1

The End!