genome.fa.s1716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1716
Parameters: 2 7 7 80 10 50 1000
Length:  82479

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--49	20	2.3	19	81	11	56	33	20	4	42	1.72
6012--6112	19	5.6	19	80	14	124	34	19	12	32	1.90
6050--6074	13	1.9	13	100	0	50	32	16	16	36	1.90
6007--6112	51	2.1	52	92	1	178	34	19	12	33	1.89
6031--6093	32	2.0	32	93	0	108	33	20	14	31	1.92
6647--6944	155	1.9	155	83	4	381	22	14	20	41	1.89
10021--10055	10	3.5	10	88	0	52	88	5	5	0	0.63
10020--10055	14	2.5	14	86	4	54	88	5	5	0	0.61
10381--10427	17	2.8	17	90	6	69	80	0	17	2	0.80
10403--10433	13	2.4	13	94	0	53	83	0	16	0	0.64
10380--10432	9	6.2	8	83	16	63	81	0	16	1	0.79
10715--10757	18	2.3	18	88	8	59	76	0	20	2	0.89
12714--12764	20	2.5	20	87	6	68	31	15	13	39	1.87
12795--12847	19	2.7	20	76	2	63	33	16	18	30	1.94
13551--13584	17	2.0	17	94	0	59	8	35	5	50	1.58
15776--15828	20	2.7	20	91	5	81	32	18	13	35	1.90
15857--15909	19	2.7	20	91	2	90	35	15	18	30	1.92
16246--16408	81	2.0	82	89	1	247	29	31	12	26	1.92
17162--17234	20	3.6	20	81	3	101	35	13	19	31	1.91
17162--17256	41	2.3	42	96	1	174	40	12	17	29	1.87
17295--17320	13	2.0	13	100	0	52	38	15	15	30	1.88
19535--19579	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23493--23530	13	2.9	13	96	0	67	34	18	15	31	1.92
25959--26031	20	3.6	20	81	3	101	35	13	19	31	1.91
25959--26053	41	2.3	42	96	1	174	40	12	17	29	1.87
26092--26117	13	2.0	13	100	0	52	38	15	15	30	1.88
26958--27229	88	3.1	87	82	3	314	20	25	15	38	1.91
26976--27208	44	5.4	44	70	12	158	20	24	16	38	1.92
27097--27259	44	3.7	44	74	4	141	20	25	18	35	1.95
27097--27271	88	2.0	88	80	2	199	20	24	18	36	1.95
27416--27581	83	2.0	83	85	4	228	16	35	16	31	1.91
27541--27622	39	2.1	39	81	0	92	24	32	10	31	1.90
27417--27719	42	7.3	41	76	7	202	16	32	16	33	1.92
29013--30139	334	3.4	331	83	6	1295	27	13	8	50	1.70
29016--30149	167	6.8	164	80	7	1094	27	13	8	50	1.70
30807--30851	10	4.2	10	81	15	54	82	2	13	2	0.86
30793--30848	23	2.4	23	88	5	78	76	3	16	3	1.06
31749--32021	147	1.9	146	81	9	342	36	12	12	38	1.81
32234--32634	154	2.6	153	83	4	448	24	19	18	37	1.94
36329--36829	60	8.3	60	76	8	367	40	11	22	25	1.87
36384--36663	30	9.3	29	68	12	120	39	11	23	25	1.88
36626--36883	121	2.1	121	79	5	288	40	10	22	26	1.86
36899--37007	30	3.7	29	70	10	76	39	13	22	24	1.90
36900--37585	60	11.4	59	79	6	551	39	11	23	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36914--37585	181	3.7	177	80	5	611	40	11	23	24	1.88
36388--37364	511	1.9	511	84	2	1316	40	11	23	25	1.87
36877--37588	121	5.9	119	77	7	534	40	11	24	24	1.88
38382--38423	18	2.3	19	84	12	52	9	14	0	76	1.02
38349--38413	22	3.0	22	75	20	66	9	13	1	75	1.11
42734--43094	79	4.6	79	84	1	382	34	13	24	28	1.92
43029--43145	51	2.3	51	87	0	162	35	9	24	30	1.87
42951--43207	130	2.0	130	85	0	352	33	12	25	28	1.92
46277--46477	34	5.5	34	69	18	125	40	18	25	15	1.90
46263--46594	75	4.4	75	79	5	355	40	17	24	17	1.91
46263--46595	151	2.2	152	90	0	515	40	17	24	17	1.91
46416--46552	35	3.8	35	75	16	127	39	17	24	18	1.92
46529--46625	43	2.3	43	85	7	126	41	14	22	21	1.89
46666--47117	61	7.5	60	85	7	537	27	19	27	25	1.99
46612--47117	120	4.1	121	83	8	566	28	19	26	25	1.99
46612--47121	122	4.2	121	84	7	572	28	19	26	25	1.99
48078--48115	9	4.2	9	86	0	58	0	15	0	84	0.63
48092--48150	12	4.7	12	79	10	64	1	3	8	86	0.75
48092--48172	21	3.8	21	79	12	83	3	2	11	82	0.89
60420--60444	13	1.9	13	100	0	50	36	16	16	32	1.90
60495--60520	13	2.0	13	100	0	52	30	15	15	38	1.88
60523--60677	52	3.0	52	89	1	231	34	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62813--62876	27	2.4	27	94	5	112	21	35	23	18	1.95
68255--68323	10	6.5	10	80	8	75	82	10	2	4	0.91
69530--70102	28	20.1	27	85	8	698	29	30	17	22	1.97
69530--70102	114	5.0	111	86	6	740	29	30	17	22	1.97
70075--70148	38	1.9	39	83	2	96	35	22	16	25	1.95
70981--71057	20	3.8	20	75	0	82	33	14	11	40	1.82
76289--76341	20	2.7	20	96	0	97	33	18	13	33	1.90
76452--76476	13	1.9	13	100	0	50	36	16	16	32	1.90
79291--79461	51	3.3	51	79	4	198	33	11	25	29	1.91
79444--79519	27	2.8	28	88	6	102	21	21	34	23	1.97
82041--82066	13	2.0	13	100	0	52	30	15	15	38	1.88
82023--82087	33	2.0	33	87	0	94	26	15	15	43	1.86

Tables:   1

The End!