genome.fa.s1746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1746
Parameters: 2 7 7 80 10 50 1000
Length:  62007

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828--1046	30	7.4	30	78	11	184	25	15	28	30	1.96
882--1060	30	6.1	29	83	12	206	23	17	30	28	1.97
2107--2208	33	3.1	32	90	2	132	34	20	13	31	1.92
2142--2179	20	1.9	20	94	0	67	34	18	15	31	1.92
2129--2186	13	4.9	13	72	23	65	34	18	15	31	1.93
2237--2292	19	2.9	19	89	2	76	35	19	16	28	1.93
2277--2303	13	2.1	13	100	0	54	40	14	14	29	1.86
2841--2939	22	4.5	22	83	2	110	23	33	3	40	1.70
2841--2939	43	2.3	44	87	1	137	23	33	3	40	1.70
4796--4822	13	2.1	13	100	0	54	40	14	14	29	1.86
10902--10949	13	4.2	13	70	29	54	37	18	12	31	1.88
10932--10969	20	1.9	20	88	0	58	42	21	7	28	1.81
10902--10970	33	2.1	33	86	5	95	39	20	10	30	1.85
10999--11054	19	2.9	19	86	2	76	33	17	17	30	1.94
11039--11065	13	2.1	13	100	0	54	40	14	14	29	1.86
11119--11186	34	2.0	34	88	2	102	29	20	17	32	1.96
10991--11332	175	2.0	175	100	0	684	31	17	18	32	1.94
11174--11229	19	2.9	19	86	2	76	33	17	17	30	1.94
11214--11240	13	2.1	13	100	0	54	40	14	14	29	1.86
14834--14892	22	2.8	21	87	10	77	38	10	18	32	1.84
15478--23568	476	17.0	474	82	3	9045	36	13	18	31	1.90
15872--23280	159	46.7	156	65	15	1379	36	13	18	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23775--24457	157	4.3	155	70	12	456	34	14	18	31	1.92
23579--31445	474	16.7	473	78	7	7355	36	14	18	31	1.90
23909--27014	159	19.6	160	65	12	569	36	14	18	31	1.91
23579--29322	937	6.1	942	84	4	6199	36	14	18	30	1.91
37904--37958	1	55.0	1	81	0	56	89	7	3	0	0.60
37904--37947	16	2.8	16	89	0	70	90	9	0	0	0.44
37904--37958	17	3.2	17	86	2	74	89	7	3	0	0.60
39030--39331	122	2.5	122	84	6	379	25	28	18	27	1.98
39010--39329	61	5.4	60	80	8	340	26	27	19	26	1.99
39305--39491	79	2.3	82	83	9	231	21	26	13	39	1.90
41848--41989	47	3.0	47	93	0	248	36	23	19	20	1.95
42684--42807	50	2.5	51	84	4	153	27	17	12	42	1.85
44054--45370	466	2.8	464	82	5	1448	35	14	18	31	1.91
45405--46043	158	4.0	155	69	12	456	36	13	17	32	1.89
44522--46223	854	2.0	845	85	3	2258	35	14	18	31	1.91
46321--47496	476	2.5	473	83	4	1476	35	13	19	31	1.91
47161--47813	315	2.1	316	87	4	933	33	14	20	31	1.93
46346--47774	159	9.0	157	66	16	449	35	13	19	31	1.91
46850--47815	159	6.1	155	68	15	466	34	13	19	31	1.91
46679--48399	791	2.2	791	82	5	1976	36	13	19	31	1.90
47470--50169	477	5.7	474	83	4	3324	36	13	19	31	1.90
50040--50486	157	2.8	157	71	15	391	32	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49867--50485	316	2.0	316	84	2	830	32	14	20	31	1.93
49373--50950	793	2.0	795	86	3	2192	34	13	19	32	1.91
50183--52419	481	4.7	472	82	5	2596	35	13	18	32	1.90
50183--52419	946	2.3	950	83	5	2798	35	13	18	32	1.90
52738--52793	20	2.9	19	81	5	76	30	17	14	37	1.90
53053--53119	33	2.0	33	100	0	134	44	20	17	16	1.86
54512--54570	27	2.2	27	93	0	100	38	8	25	27	1.84
56562--56638	32	2.4	32	93	0	127	40	10	23	25	1.86
56670--56694	13	1.9	13	100	0	50	36	16	16	32	1.90
56775--56815	21	2.0	21	85	9	57	36	12	14	36	1.84
61029--61067	20	1.9	21	94	5	71	38	10	17	33	1.84

Tables:   1

The End!