genome.fa.s1753.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1753
Parameters: 2 7 7 80 10 50 1000
Length:  212588

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174571--174600	13	2.3	13	94	0	51	30	13	13	43	1.82
174521--174649	62	2.1	63	91	4	208	27	17	17	38	1.91
176421--176462	21	2.0	21	85	0	57	23	28	4	42	1.74
177556--177622	36	1.9	35	85	11	93	28	26	11	32	1.92
178093--178130	13	2.9	13	88	0	58	34	15	15	34	1.90
178203--178260	13	4.9	13	72	23	65	37	15	17	29	1.90
178203--178282	33	2.4	33	87	4	108	36	15	17	31	1.91
178320--178360	21	2.0	21	85	9	57	36	12	14	36	1.84
180469--180588	51	2.4	51	86	0	177	30	26	12	30	1.93
180409--180662	130	2.0	130	84	3	341	29	26	11	32	1.91
180522--180828	79	3.9	78	78	5	323	27	24	13	34	1.93
193161--193213	16	3.2	16	81	2	52	84	3	7	3	0.84
194269--194457	55	3.3	55	88	7	263	28	30	20	20	1.98
194289--194470	61	3.1	60	86	6	248	25	31	19	24	1.98
194563--194648	27	3.1	27	61	9	66	26	23	20	29	1.99
194324--194616	156	1.9	155	89	0	460	24	29	20	25	1.99
194224--194681	210	2.2	207	85	5	589	24	29	18	27	1.98
194479--194865	61	6.5	60	81	9	420	24	27	19	28	1.99
194478--194851	122	3.2	118	84	6	499	25	26	20	27	1.99
194857--195130	42	6.7	43	70	15	161	19	27	12	40	1.88
194856--195020	87	1.9	85	85	8	226	20	28	13	38	1.90
194835--195037	42	4.8	42	74	12	159	20	28	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195027--195126	40	2.5	40	82	12	107	16	25	12	47	1.80
195773--195802	13	2.3	13	100	0	60	30	16	13	40	1.87
195724--195851	62	2.0	63	92	4	215	28	17	14	39	1.89
198260--198379	51	2.4	51	85	0	168	30	25	12	31	1.93
198359--198435	28	2.8	27	86	4	100	22	31	20	25	1.98
198469--198698	79	2.9	78	80	8	266	26	25	14	32	1.95
201729--201845	52	2.2	52	93	0	207	33	14	17	35	1.90
201831--201882	13	4.5	13	68	26	53	34	17	13	34	1.89
201834--201898	33	2.0	33	88	11	98	32	18	15	33	1.92
201929--201983	19	2.8	19	91	2	83	36	14	18	30	1.91
202567--202626	31	2.0	29	93	6	102	31	23	6	38	1.81
204291--204338	21	2.4	21	86	6	64	45	0	20	33	1.52
210631--210703	20	3.7	19	83	7	76	36	16	17	28	1.92
210631--210684	19	2.8	20	85	2	74	35	16	18	29	1.93

Tables:   1   2

The End!