genome.fa.s1764.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1764
Parameters: 2 7 7 80 10 50 1000
Length:  74514

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2407	476	5.1	473	82	3	2898	35	14	20	29	1.92
1--2407	952	2.5	950	89	3	3631	35	14	20	29	1.92
1586--3173	793	2.0	793	86	3	2194	35	14	20	29	1.93
2064--2724	316	2.1	316	93	1	1135	35	14	20	29	1.93
2064--2766	318	2.2	315	91	2	883	35	14	20	29	1.92
2064--2900	318	2.6	317	84	4	773	35	14	20	29	1.92
9827--16881	476	14.8	476	85	2	8690	35	14	19	29	1.92
17635--17660	13	2.0	13	100	0	52	30	15	15	38	1.88
20035--20081	21	2.3	21	76	23	55	42	4	19	34	1.70
20202--20240	13	3.0	13	96	0	69	35	15	17	30	1.91
20226--20304	20	3.7	20	78	15	77	44	15	15	25	1.85
22320--22350	15	2.1	15	93	0	53	12	22	16	48	1.80
24154--24198	21	2.1	21	84	8	56	22	20	4	53	1.63
26416--26441	13	2.0	13	100	0	52	30	15	15	38	1.88
26824--37701	476	22.9	476	87	1	14533	35	14	20	29	1.92
33787--34432	159	4.1	159	66	10	420	36	13	20	29	1.92
37331--38056	363	2.0	364	87	1	1037	36	15	18	29	1.92
37704--40795	476	6.5	477	88	2	4145	34	14	20	30	1.92
37944--40027	159	13.1	160	63	12	499	34	14	20	30	1.92
40807--40832	13	2.0	13	100	0	52	61	7	7	23	1.49
40537--41119	321	1.8	322	87	2	866	37	14	17	30	1.90
41811--42914	476	2.3	476	88	1	1604	35	14	20	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45958--46106	52	2.9	51	87	4	217	30	17	17	34	1.93
46095--46119	13	1.9	13	100	0	50	36	16	16	32	1.90
46160--46226	33	2.0	33	88	0	98	40	14	11	32	1.83
46182--46206	13	1.9	13	100	0	50	32	16	16	36	1.90
46493--49314	477	5.9	477	85	1	3561	34	14	19	30	1.92
49370--51605	475	4.7	476	83	2	2701	35	14	19	31	1.91
51988--53146	159	7.3	157	66	12	413	35	14	20	30	1.92
51644--53364	476	3.6	478	85	3	2254	35	14	20	29	1.92
56515--56540	13	2.0	13	100	0	52	38	15	15	30	1.88
58758--58802	22	2.1	21	84	8	56	55	4	17	22	1.60
60605--60635	15	2.1	15	93	0	53	48	16	22	12	1.80
62649--62728	20	3.8	20	78	15	88	26	13	15	45	1.83
62714--62752	13	3.0	13	96	0	69	30	17	15	35	1.91
62873--62918	21	2.2	20	81	11	58	32	19	4	43	1.71
65272--65297	13	2.0	13	100	0	52	38	15	15	30	1.88
67515--67559	21	2.1	21	84	8	56	53	4	20	22	1.63
69363--69393	15	2.1	15	93	0	53	48	16	22	12	1.80
71406--71485	20	3.8	20	75	15	79	26	15	15	43	1.85
71471--71509	13	3.0	13	96	0	69	30	17	15	35	1.91
71631--71677	21	2.2	20	82	17	60	34	19	4	42	1.70

Tables:   1

The End!