genome.fa.s1769.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1769
Parameters: 2 7 7 80 10 50 1000
Length:  283831

Tables:   1   2   

This is table  2  of  2  ( 209 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161049--161080	11	2.9	11	100	0	64	37	0	0	62	0.95
161104--161144	21	1.9	21	85	5	55	53	2	2	41	1.27
161387--161427	16	2.5	17	84	7	50	48	2	0	48	1.14
162656--162686	2	15.5	2	100	0	62	48	0	0	51	1.00
170559--170611	22	2.3	24	77	6	56	49	0	0	50	1.00
172225--172321	28	3.3	27	74	21	72	37	2	0	60	1.08
172249--172296	18	2.5	20	74	19	57	37	2	0	60	1.09
172816--172843	2	14.0	2	100	0	56	50	0	0	50	1.00
172893--172961	28	2.4	29	80	11	79	56	2	1	39	1.23
173655--173749	33	2.8	33	82	9	104	36	0	1	62	1.03
174255--174288	18	1.9	18	88	5	52	26	11	5	55	1.58
174803--174889	21	4.2	20	72	8	59	35	1	0	63	1.02
174792--174837	23	2.0	24	83	12	60	32	4	0	63	1.14
174827--174886	15	4.4	15	72	19	51	38	0	0	61	0.96
174830--174934	54	1.9	55	81	9	126	40	0	0	59	0.98
176900--176972	17	4.4	18	73	18	77	42	0	0	57	0.98
176930--176980	24	2.1	23	82	13	59	41	0	0	58	0.98
176925--177010	32	2.7	31	75	10	84	47	0	1	51	1.08
177423--177463	11	3.4	12	78	21	50	68	0	0	31	0.90
178174--178235	24	2.4	25	76	15	63	35	6	1	56	1.35
179832--179884	3	17.7	3	100	0	106	67	0	0	32	0.91
181896--181947	25	2.0	27	85	7	72	57	5	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189228--189258	10	3.0	10	95	4	53	51	0	0	48	1.00
189275--189350	35	2.2	35	88	2	109	36	1	1	60	1.13
189992--190037	2	23.0	2	90	0	74	50	4	0	45	1.21
190748--190774	12	2.2	12	100	0	54	22	0	0	77	0.76
193385--193457	17	4.4	17	71	23	66	43	1	1	53	1.17
193387--193462	32	2.4	32	82	8	84	43	1	1	53	1.17
193384--193487	48	2.1	50	78	16	112	40	0	0	57	1.11
193740--193838	43	2.5	40	86	13	129	32	13	10	44	1.77
194147--194201	20	2.7	20	94	2	92	43	7	0	49	1.30
194338--194388	21	2.5	22	84	12	72	49	0	3	47	1.20
195381--195426	23	2.0	23	91	8	76	63	0	0	36	0.95
195360--195414	29	1.9	28	81	3	65	56	0	0	43	0.99
195677--195806	69	1.9	68	82	7	165	51	2	0	45	1.19
195833--195890	22	2.6	22	76	20	59	60	3	0	36	1.14
195714--196002	109	2.6	109	79	12	290	52	2	2	43	1.26
195885--195984	35	2.9	34	80	16	100	51	0	2	47	1.12
195976--196027	21	2.5	20	81	9	59	63	3	1	30	1.23
196309--196663	121	2.9	123	80	10	390	41	2	2	53	1.27
196301--196663	124	2.9	125	80	13	398	41	2	2	53	1.26
196446--196473	14	2.0	14	100	0	56	14	0	0	85	0.59
196340--196663	124	2.7	125	84	7	418	40	2	2	54	1.27
196359--196733	123	3.1	121	78	15	300	42	2	2	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197123--197166	18	2.4	18	96	0	79	31	9	20	38	1.84
197295--198155	93	9.5	92	83	6	924	42	7	15	33	1.76
197295--198150	185	4.7	184	83	6	982	43	7	15	33	1.75
197324--198155	278	3.1	275	84	5	973	43	7	16	33	1.76
198081--198221	69	2.0	71	83	8	182	43	8	17	30	1.79
202372--202421	11	4.6	11	77	2	57	62	0	0	38	0.96
201888--203737	298	6.2	298	92	0	3010	47	6	8	37	1.60
203575--203618	11	4.0	11	81	0	52	63	0	0	36	0.95
203727--203769	15	2.9	14	83	10	50	69	0	2	27	1.00
204366--204394	2	14.5	2	100	0	58	51	0	0	48	1.00
206181--206215	15	2.3	15	90	0	52	65	8	0	25	1.21
211776--211821	21	2.1	22	84	4	58	30	19	30	19	1.97
213257--213327	27	2.6	27	88	6	99	22	7	23	46	1.76
222223--222289	22	3.0	22	71	14	66	46	0	0	53	1.00
224195--224235	8	5.0	8	87	3	55	48	12	0	39	1.41
224191--224235	12	3.7	12	84	3	54	48	13	0	37	1.42
228277--228325	26	2.0	24	88	8	71	51	4	2	42	1.32
228310--228367	26	2.2	27	81	9	66	48	1	3	46	1.29
228972--229008	3	12.3	3	100	0	74	0	32	0	67	0.91
231355--231385	2	15.5	2	93	0	53	48	3	0	48	1.17
233604--233649	3	15.3	3	100	0	92	32	0	0	67	0.91
236191--236222	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238058--238121	31	2.1	30	91	2	101	57	3	7	31	1.43
240198--240268	23	3.1	22	77	18	74	47	4	1	46	1.30
240230--240287	26	2.2	27	81	9	66	46	3	3	46	1.36
240894--240937	3	14.7	3	100	0	88	0	34	0	65	0.93
246162--246204	3	14.0	3	90	4	68	34	0	2	62	1.08
248836--248895	2	29.0	2	90	6	84	48	6	0	45	1.29
248835--248909	36	2.1	36	94	0	132	44	12	1	42	1.50
251490--251535	21	2.1	22	84	4	58	19	30	19	30	1.97
254109--254179	27	2.6	28	86	6	92	46	23	5	23	1.74
255812--255896	31	2.9	29	78	5	82	55	7	4	32	1.48
257842--257882	16	2.4	17	80	19	50	48	4	0	46	1.23
258376--258437	30	2.1	30	100	0	124	38	22	6	32	1.80
260307--260382	23	3.2	23	81	9	82	47	3	1	47	1.29
263360--263476	59	2.0	60	89	1	182	50	5	13	29	1.65
267448--267501	20	2.8	20	82	2	65	25	5	0	68	1.11
273672--273702	3	10.3	3	100	0	62	32	0	0	67	0.91
280270--280310	16	2.4	17	80	19	50	48	4	0	46	1.23
280491--280671	89	2.0	90	95	1	328	44	4	8	41	1.56
281645--281699	24	2.2	26	87	6	78	50	3	1	43	1.30
281684--281741	26	2.2	27	81	9	66	48	3	1	46	1.29
282344--282387	3	14.7	3	100	0	88	0	34	0	65	0.93
283063--283142	28	2.9	29	88	5	112	22	7	22	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283122--283168	24	1.9	25	86	4	69	23	6	27	42	1.78

Tables:   1   2

The End!