genome.fa.s1769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1769
Parameters: 2 7 7 80 10 50 1000
Length:  283831

Tables:   1   2   

This is table  1  of  2  ( 209 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1742--1787	22	2.0	24	83	8	60	45	2	0	52	1.13
2501--2604	47	2.2	48	88	6	151	34	8	12	44	1.73
3299--3356	22	2.8	20	73	19	55	31	0	5	63	1.16
3317--3364	16	3.0	16	76	11	53	37	0	2	60	1.09
3279--3356	42	1.9	39	82	7	93	30	0	3	65	1.10
4537--4583	23	2.1	21	81	14	51	48	0	0	51	1.00
4985--5015	12	2.5	13	89	10	55	58	0	0	41	0.98
13031--13119	30	3.2	26	75	16	81	48	0	5	46	1.26
13024--13116	29	3.2	28	75	15	100	48	0	6	45	1.28
14455--14506	24	2.2	24	96	3	97	46	7	26	19	1.77
17251--17307	29	2.0	29	86	6	80	54	1	7	36	1.38
18541--18579	20	2.0	20	89	0	60	35	0	0	64	0.94
18549--18590	19	2.2	19	91	4	66	33	0	0	66	0.92
18543--18597	25	2.2	26	87	9	78	34	0	1	63	1.05
18790--18840	24	2.2	23	82	10	59	60	1	0	37	1.08
18845--18896	20	2.5	20	72	12	52	57	0	3	38	1.17
19640--19682	22	2.0	22	85	0	59	44	2	0	53	1.13
20189--20215	2	13.5	2	100	0	54	48	0	0	51	1.00
20821--20856	3	12.0	3	100	0	72	33	0	0	66	0.92
22068--22114	20	2.6	17	76	20	51	51	0	0	48	1.00
22077--22117	20	2.1	20	86	4	57	53	0	0	46	1.00
23002--23026	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24575--24601	5	5.4	5	100	0	54	0	77	0	22	0.76
26630--26679	26	2.0	26	88	7	77	32	0	2	66	1.03
26871--26910	18	2.2	19	86	4	55	52	2	0	45	1.14
26900--26942	20	2.2	20	87	8	61	51	6	0	41	1.29
26940--26975	16	2.2	17	90	9	58	58	2	0	38	1.13
27711--27767	29	1.9	30	85	3	80	36	1	1	59	1.18
28360--28392	13	2.6	13	85	4	50	30	0	0	69	0.88
28522--28554	3	11.0	3	100	0	66	0	33	0	66	0.92
29455--29488	13	2.7	12	90	9	50	23	0	2	73	0.97
30804--30841	12	3.1	12	88	3	58	44	0	0	55	0.99
31176--31223	9	5.3	9	80	5	53	29	0	0	70	0.87
31542--31580	21	1.9	20	89	5	60	25	2	0	71	0.98
31650--31689	17	2.3	17	83	16	55	57	0	0	42	0.98
31634--31687	26	2.1	26	86	6	74	55	0	0	44	0.99
32178--32202	2	12.5	2	100	0	50	52	0	0	48	1.00
32281--32322	18	2.4	18	88	4	59	50	0	0	50	1.00
34235--34279	19	2.2	21	84	7	58	24	2	2	71	1.09
34260--34323	33	2.0	32	85	11	87	35	1	0	62	1.05
34264--34337	33	2.2	32	79	9	76	35	2	2	59	1.26
35578--35631	27	2.0	28	96	3	101	48	3	14	33	1.62
36341--36382	16	2.6	16	81	11	50	52	2	7	38	1.42
36463--36515	25	2.2	25	90	10	83	26	0	1	71	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36614--36656	21	2.0	21	86	8	61	41	0	11	46	1.40
37067--37095	9	3.3	9	95	4	51	27	0	0	72	0.85
37417--37459	11	3.6	12	81	9	52	30	0	0	69	0.88
37414--37463	20	2.7	19	84	9	59	32	0	0	68	0.90
37430--37469	20	2.0	20	85	0	53	32	0	0	67	0.91
37515--37568	26	2.1	26	82	6	65	57	0	0	42	0.98
37934--37977	18	2.4	18	76	0	52	47	0	2	50	1.13
38007--38065	19	3.2	18	74	9	57	49	1	0	49	1.11
41549--41599	15	3.3	16	81	5	52	64	0	0	35	0.94
45569--45595	14	1.9	14	100	0	54	37	0	0	62	0.95
47724--47775	16	3.2	16	77	0	50	28	1	5	63	1.28
48700--48766	32	2.1	32	88	0	98	49	1	0	49	1.10
48721--48774	15	3.2	17	73	21	60	44	1	0	53	1.11
48712--48844	32	4.0	31	74	19	101	51	2	0	45	1.13
48953--48997	20	2.2	20	88	7	65	53	0	0	46	1.00
48967--49035	24	2.9	24	68	10	61	47	0	0	52	1.00
49065--49139	38	2.0	36	85	10	98	48	1	0	50	1.09
49123--49214	31	3.5	24	70	29	73	54	1	1	43	1.14
49134--49203	31	2.3	29	86	11	97	57	1	1	40	1.17
49134--49203	15	4.7	15	69	23	58	57	1	1	40	1.17
50526--50606	41	2.0	41	82	4	101	37	4	1	56	1.29
51193--51238	22	2.1	22	88	8	67	45	4	2	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51273--51343	28	2.5	28	81	4	90	46	0	4	49	1.21
53708--53751	22	2.0	22	81	0	52	52	4	0	43	1.22
53831--53890	27	2.1	28	82	11	70	55	3	0	41	1.16
61993--62178	92	2.0	92	98	0	363	32	16	15	36	1.90
71442--71472	14	2.2	14	94	0	53	45	0	0	54	0.99
71438--71490	22	2.4	21	78	12	52	47	1	0	50	1.12
72175--72215	21	2.0	21	85	9	57	68	0	2	29	1.03
72292--72350	30	2.0	30	83	6	75	35	3	6	54	1.44
73335--73370	11	3.2	11	88	7	54	50	0	0	50	1.00
73336--73368	17	1.9	17	88	11	50	54	0	0	45	0.99
74621--74671	28	1.9	25	84	11	66	41	3	3	50	1.39
74641--74726	30	2.9	29	73	11	84	37	5	4	52	1.46
77119--77162	14	3.1	14	80	9	54	40	2	0	56	1.11
77786--77849	29	2.2	30	81	10	80	45	0	0	54	0.99
84162--84216	3	18.3	3	100	0	110	32	0	0	67	0.91
94849--94905	30	2.0	28	86	13	80	49	0	0	50	1.00
94859--94971	60	1.9	60	81	7	140	46	0	0	53	1.00
96664--96689	2	13.0	2	100	0	52	50	0	0	50	1.00
101090--101124	2	17.5	2	100	0	70	51	0	0	48	1.00
104622--104678	28	2.0	28	83	13	71	29	7	3	59	1.40
105226--105274	13	3.9	13	79	10	50	75	0	0	24	0.80
106083--106127	23	2.0	23	86	0	63	35	2	11	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106885--106918	2	17.0	2	100	0	68	50	0	0	50	1.00
107111--107138	2	14.0	2	100	0	56	0	50	0	50	1.00
107818--107852	17	2.1	17	100	0	70	25	11	5	57	1.56
109204--109276	25	2.8	25	89	4	101	38	1	2	57	1.22
109513--109537	13	1.9	13	100	0	50	52	0	0	48	1.00
110007--110040	14	2.5	14	90	4	52	50	0	2	47	1.16
111374--111460	30	2.9	27	73	20	68	43	8	0	48	1.32
112503--112584	33	2.4	34	77	4	103	37	2	8	51	1.46
114517--114548	5	6.4	5	92	0	55	81	3	0	15	0.82
117870--117906	19	1.9	20	88	5	58	59	0	0	40	0.97
123266--123315	16	3.2	16	86	8	59	52	2	0	46	1.12
125621--125682	18	3.5	17	76	14	54	56	1	1	40	1.19
125763--125816	19	2.8	19	83	10	67	40	0	1	57	1.09
127199--127245	4	12.0	4	81	4	51	46	6	0	46	1.28
127199--127245	10	4.8	10	81	2	51	46	6	0	46	1.28
128606--128635	14	2.1	15	93	6	53	26	13	30	30	1.94
134417--134659	73	3.3	72	86	2	308	37	11	2	49	1.50
134500--134627	34	3.6	33	69	18	96	37	14	1	46	1.55
140008--140057	12	4.1	13	77	10	52	50	0	0	50	1.00
143022--143064	14	3.0	14	86	3	59	76	2	13	6	1.08
151668--151705	2	19.0	2	100	0	76	50	0	0	50	1.00
151833--151861	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152227--152256	2	15.5	2	93	6	53	50	0	0	50	1.00
154368--154392	13	1.9	13	100	0	50	52	0	0	48	1.00
154614--154683	28	2.5	28	77	13	81	42	4	0	52	1.20
155265--155335	29	2.5	28	82	11	90	36	1	0	61	1.05
155277--155326	15	3.3	15	81	15	50	32	2	0	66	1.03
155309--155350	23	2.0	22	82	17	54	40	0	0	59	0.97
156016--156237	111	2.0	112	90	0	356	51	8	9	30	1.64
157424--157457	2	17.0	2	100	0	68	50	0	0	50	1.00
157787--157861	37	2.0	37	97	0	141	37	12	24	26	1.90
160302--160333	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2