genome.fa.s1789.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1789
Parameters: 2 7 7 80 10 50 1000
Length:  204392

Tables:   1   2   

This is table  2  of  2  ( 182 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139924--139961	16	2.4	16	86	8	51	0	13	2	84	0.73
144012--144065	21	2.7	21	85	5	76	37	12	16	33	1.87
151171--151211	20	2.0	20	90	0	64	19	41	29	9	1.83
153297--153322	13	2.0	13	100	0	52	38	15	15	30	1.88
153279--153342	32	2.0	33	87	3	94	39	17	14	29	1.88
155560--155586	13	2.1	13	100	0	54	55	0	7	37	1.28
160444--160572	52	2.5	52	92	0	213	30	17	16	36	1.91
160560--160612	20	2.7	20	93	0	97	41	15	16	26	1.88
160444--160592	52	2.9	51	85	4	201	31	16	16	34	1.92
160652--160689	20	1.9	19	89	5	58	52	7	10	28	1.64
162149--162174	13	2.0	13	100	0	52	30	15	15	38	1.88
164505--164558	20	2.7	20	88	11	76	35	18	14	31	1.91
166984--167033	21	2.4	21	83	9	59	48	0	20	32	1.50
166991--167033	21	2.0	22	86	4	61	51	0	20	27	1.48
171907--172286	154	2.5	154	79	6	437	38	22	16	23	1.93
173571--173623	12	4.5	12	86	9	74	0	18	1	79	0.83
173563--173622	23	2.6	23	86	7	68	1	21	1	75	0.99
173951--174505	167	3.4	164	77	6	546	49	7	11	31	1.67
179814--180563	47	16.2	46	76	8	506	24	21	14	39	1.91
179907--180422	189	2.8	175	79	8	514	25	20	14	38	1.91
180151--180405	130	2.0	130	82	4	318	25	21	15	36	1.93
179954--180430	177	2.6	181	80	6	525	25	20	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180869--181004	42	3.2	43	70	19	131	21	28	10	39	1.86
180822--181045	84	2.7	84	83	2	245	19	27	13	39	1.89
182190--183016	165	5.0	166	82	7	883	29	11	7	51	1.66
182282--182998	331	2.2	332	84	5	898	31	11	7	50	1.65
183347--183392	20	2.3	20	85	14	60	82	2	15	0	0.76
183445--183485	22	1.9	22	85	14	59	9	17	9	63	1.51
183445--183492	22	2.2	22	82	14	55	12	16	8	62	1.53
185014--185418	154	2.6	152	81	6	458	24	16	19	39	1.92
188627--188750	52	2.4	51	94	1	212	28	17	18	35	1.94
188627--188770	52	2.8	51	88	5	202	29	17	18	34	1.94
188759--188783	13	1.9	13	100	0	50	36	16	16	32	1.90
188824--188890	33	2.0	33	88	0	98	40	13	11	34	1.81
188846--188870	13	1.9	13	100	0	50	32	16	16	36	1.90
189749--189817	22	3.2	22	62	25	56	30	17	26	26	1.97
189625--189911	49	5.8	49	82	8	309	32	16	25	26	1.96
189932--190385	30	15.5	30	77	9	359	24	16	29	29	1.97
189916--190387	57	8.0	57	74	13	309	24	17	29	29	1.97
189916--190385	88	5.3	87	78	10	382	24	17	29	29	1.97
190207--190381	29	6.0	29	81	6	183	26	18	29	26	1.98
190094--190376	121	2.4	116	79	7	293	26	17	29	26	1.97
194599--194718	52	2.3	52	97	0	222	29	17	18	35	1.94
194599--194738	52	2.7	51	90	4	210	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194727--194751	13	1.9	13	100	0	50	36	16	16	32	1.90
194817--194841	13	1.9	13	100	0	50	32	16	16	36	1.90
194795--194861	33	2.0	33	88	0	98	40	13	11	34	1.81
195425--195799	169	2.2	169	81	8	409	36	14	26	22	1.93
195709--196376	49	13.7	49	88	3	974	29	17	26	25	1.98
196376--196516	34	4.2	34	93	0	241	19	17	36	27	1.93
196376--196516	67	2.1	67	93	2	239	19	17	36	27	1.93
196498--196880	34	11.4	33	81	11	356	32	12	34	20	1.90
196519--196850	63	5.1	62	80	15	350	32	12	34	20	1.90
196689--196740	27	1.9	27	92	0	86	23	17	34	25	1.96
196498--196846	131	2.6	130	84	8	445	31	12	35	20	1.90
196711--196883	70	2.5	69	88	8	253	34	12	33	19	1.89
196580--196904	167	2.0	166	91	3	537	31	13	34	20	1.91
196519--196880	201	1.8	192	85	7	503	32	12	34	20	1.90
196498--196906	131	3.1	129	79	14	426	31	12	34	21	1.91
196856--196940	30	3.0	27	79	12	91	28	17	29	24	1.97
197866--197896	16	1.9	16	93	0	53	0	6	6	87	0.68
198136--198174	1	39.0	1	84	0	51	0	0	7	92	0.39

Tables:   1   2

The End!