genome.fa.s1825.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1825
Parameters: 2 7 7 80 10 50 1000
Length:  85858

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14272--14335	9	7.2	9	87	3	85	85	10	3	0	0.69
14272--14329	26	2.2	26	90	0	89	86	12	1	0	0.65
14271--14335	26	2.6	24	81	11	76	84	12	3	0	0.73
15316--16070	115	6.5	115	79	12	764	25	29	20	23	1.99
15299--16070	176	4.4	173	84	8	896	26	29	20	23	1.99
15322--16070	55	12.9	56	82	9	773	26	29	20	23	1.99
15322--16070	237	3.2	236	89	3	1096	26	29	20	23	1.99
16863--16963	19	6.0	18	68	26	78	37	9	14	37	1.80
16866--16960	32	3.0	32	95	0	163	36	10	15	36	1.82
16983--17037	21	2.7	21	91	2	85	23	18	12	45	1.83
19555--19769	52	4.2	51	82	3	250	29	26	11	33	1.91
19752--19828	28	2.7	30	86	7	99	23	31	19	25	1.98
19379--19879	263	1.9	263	90	3	812	28	25	13	32	1.94
19782--20003	78	2.8	78	79	5	250	24	28	16	30	1.96
21826--21963	68	2.0	67	87	1	195	38	21	15	24	1.92
22265--22409	75	1.9	75	95	0	263	24	30	15	29	1.96
22631--22960	42	7.8	43	70	8	165	19	26	18	35	1.95
22612--22787	85	2.1	84	79	3	183	21	23	18	36	1.95
22780--22960	85	2.1	85	80	2	202	19	27	17	35	1.94
22358--22965	212	2.9	212	76	6	509	21	26	16	35	1.94
23053--23817	168	4.6	168	79	5	764	18	24	12	44	1.85
23174--23780	84	7.2	84	69	8	297	18	24	12	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23087--23849	335	2.3	333	79	5	829	19	24	12	44	1.84
25811--25855	15	2.9	15	81	12	56	77	2	8	11	1.07
25813--25861	16	3.2	15	77	13	55	75	2	12	10	1.13
25812--25862	15	3.3	15	76	23	52	76	1	11	9	1.10
28240--29245	156	6.5	151	76	8	692	23	17	20	38	1.93
30494--30548	23	2.4	23	75	3	58	30	3	3	61	1.30
30961--30992	16	2.0	16	100	0	64	25	6	18	50	1.70
32686--32749	19	3.3	19	78	8	58	75	1	18	4	1.06
33635--33672	16	2.4	17	86	13	62	86	7	0	5	0.69
39027--39080	20	2.7	20	94	0	90	40	12	18	27	1.87
44980--45244	79	3.3	78	82	4	273	39	13	18	28	1.89
48195--48243	12	3.8	12	75	15	53	55	24	16	4	1.59
49638--49934	157	1.9	159	86	3	431	29	14	14	42	1.85
49990--51000	156	6.5	153	74	8	501	24	17	19	38	1.93
58720--58951	77	3.0	77	81	5	270	45	9	4	39	1.58
59601--59659	17	3.6	17	75	25	72	52	0	0	47	1.00
59599--59661	32	2.0	32	96	0	117	52	0	0	47	1.00
60455--60497	2	22.5	2	88	9	63	48	0	0	51	1.00
60880--60929	21	2.3	21	86	3	64	38	6	4	52	1.45
60892--60936	21	2.1	21	100	0	90	40	4	4	51	1.42
62494--62541	18	2.8	17	76	17	55	33	0	2	64	1.05
62483--62529	20	2.5	19	79	6	51	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62674--62704	15	2.0	15	93	6	53	35	0	0	64	0.94
63230--63254	13	1.9	13	100	0	50	56	8	0	36	1.29
65277--65312	2	18.0	2	100	0	72	50	0	0	50	1.00
68195--68237	23	1.9	22	85	4	59	37	0	0	62	0.95
68195--68239	24	1.9	23	81	4	54	35	0	0	64	0.94
68318--68366	24	2.0	26	84	15	68	59	8	0	32	1.27
68931--68987	24	2.4	24	79	5	62	54	1	1	42	1.21
69742--69784	17	2.5	17	88	7	61	20	6	2	69	1.23
71948--71982	16	2.2	16	89	0	52	60	34	2	2	1.26
72170--72213	20	2.2	20	88	8	63	50	4	4	40	1.43
73024--73110	31	2.9	29	74	16	70	55	1	2	41	1.20
74238--75439	612	2.0	612	94	0	2138	33	16	15	33	1.91

Tables:   1

The End!