Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1830
Parameters: 2 7 7 80 10 50 1000
Length:  215889

Tables:   1   2   

This is table  2  of  2  ( 165 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
164327--164386
22
2.6
22
76
5
57
38
1
0
60
1.07
164338--164384
22
2.1
22
84
7
60
36
2
0
61
1.08
164757--164786
3
10.0
3
92
0
51
66
3
0
30
1.07
172289--172324
14
2.6
14
90
0
54
69
2
2
25
1.15
172395--172444
22
2.3
20
80
10
55
44
4
4
48
1.40
172750--172783
2
17.0
2
93
0
59
52
0
0
47
1.00
173401--173431
2
15.5
2
100
0
62
51
48
0
0
1.00
175074--175103
1
30.0
1
100
0
60
0
100
0
0
0.00
175978--176036
29
2.0
29
100
0
118
25
27
10
37
1.88
180621--180663
2
21.5
2
100
0
86
51
0
48
0
1.00
181211--181275
22
3.0
21
72
21
53
50
0
0
49
1.00
181221--181293
37
2.0
37
86
0
101
45
1
1
52
1.18
181546--181605
21
2.7
22
84
7
68
35
3
1
60
1.23
181623--181668
21
2.2
20
80
3
56
39
4
6
50
1.48
181833--181882
23
2.2
24
82
10
68
50
2
2
46
1.24
181975--182008
17
2.1
16
88
5
50
23
0
2
73
0.97
183094--183130
16
2.2
18
90
9
60
29
8
2
59
1.40
183394--183446
17
3.2
16
81
7
61
30
5
0
64
1.17
185208--185279
27
2.7
27
82
8
76
16
15
0
68
1.22
188654--188708
19
2.8
19
83
5
65
41
12
14
30
1.83
188651--188707
21
2.8
21
78
5
73
40
12
14
33
1.83
199066--199194
52
2.5
52
94
0
231
27
17
18
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
199203--199227
13
1.9
13
100
0
50
36
16
16
32
1.90
199270--199367
19
5.7
19
72
27
94
38
16
11
33
1.84
199272--199365
32
2.9
32
93
1
161
38
17
10
34
1.84
203312--203446
51
2.6
51
79
1
153
39
6
21
32
1.79
206515--206553
20
1.9
21
84
5
53
48
28
0
23
1.51
207309--207437
52
2.5
52
93
0
222
28
16
17
37
1.91
207513--207565
20
2.7
20
91
2
90
39
16
11
32
1.85
208281--208407
67
1.9
68
86
1
184
37
11
25
24
1.90
208411--208696
92
3.1
92
91
2
446
32
17
25
25
1.97
208362--208691
43
6.8
49
78
10
299
32
16
24
26
1.96
208684--208914
32
7.2
32
87
7
337
16
18
36
28
1.93
208930--208983
27
2.0
27
88
0
81
31
14
31
22
1.94
208985--209254
58
4.5
58
72
14
235
31
13
32
22
1.93
208927--209395
88
5.2
88
84
4
555
31
14
32
22
1.93
209104--209230
66
2.0
63
84
7
166
33
12
33
20
1.90
208927--209333
181
2.2
181
95
0
715
31
13
31
22
1.93
208985--209341
31
12.0
29
70
13
181
31
13
32
22
1.93
208987--209406
31
14.1
30
70
13
156
30
14
32
22
1.94
210352--210407
16
3.7
15
81
13
78
0
10
5
83
0.78
210666--210691
10
2.6
10
100
0
52
0
0
7
92
0.39
214596--214663
19
3.9
18
76
23
83
38
14
11
35
1.83
214618--214642
13
1.9
13
100
0
50
32
16
16
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
214599--214661
32
2.0
32
96
0
117
36
15
12
34
1.86

Tables:   1   2

The End!