Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1895
Parameters: 2 7 7 80 10 50 1000
Length:  72589

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5709--5768
22
2.8
21
85
12
70
51
0
0
48
1.00
8440--9365
465
2.0
465
96
0
1717
36
13
13
35
1.85
10661--10714
22
2.5
22
76
11
56
50
0
1
48
1.11
11666--11721
23
2.5
22
77
8
69
55
8
1
33
1.42
12938--12993
2
28.0
2
92
0
94
46
0
1
51
1.11
13960--13997
3
12.7
3
100
0
76
31
0
0
68
0.90
21076--21104
12
2.4
12
100
0
58
68
6
0
24
1.13
26336--26395
22
2.8
21
85
12
70
51
1
0
46
1.10
26330--26409
22
3.7
21
75
6
54
52
3
1
42
1.27
27516--27580
13
4.9
13
72
20
55
21
0
1
76
0.86
27517--27580
26
2.4
25
85
14
85
20
0
1
78
0.84
27517--27583
18
3.9
16
73
19
55
20
0
1
77
0.85
27517--27602
27
3.2
26
80
12
86
22
0
3
74
0.97
30122--30157
3
12.0
3
100
0
72
66
0
0
33
0.92
31606--31640
14
2.5
13
90
9
52
80
0
0
20
0.72
31682--31992
50
6.2
50
90
1
424
29
19
20
30
1.97
31682--31992
102
3.1
102
87
1
441
29
19
20
30
1.97
31682--31993
152
2.1
152
86
3
441
29
19
20
30
1.97
34481--34530
20
2.4
20
80
12
57
52
0
6
42
1.26
35231--35448
34
6.5
34
87
1
278
25
7
26
40
1.83
35231--35450
67
3.3
67
88
1
314
25
7
26
40
1.82
39862--40079
34
6.5
34
87
1
287
25
7
26
40
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39862--40081
67
3.3
67
88
1
323
25
7
26
40
1.82
44867--45085
34
6.5
33
88
1
278
40
26
7
25
1.81
44867--45085
68
3.2
67
87
3
314
40
26
7
25
1.81
44866--45085
102
2.2
101
92
2
370
40
26
7
25
1.81
49502--49718
34
6.4
33
85
4
265
40
27
7
24
1.82
49502--49718
68
3.2
67
87
3
310
40
27
7
24
1.82
49501--49718
102
2.1
101
92
2
366
40
27
7
24
1.81
53329--53357
1
29.0
1
100
0
58
0
0
0
100
0.00
59906--59973
27
2.5
28
80
7
86
48
19
8
23
1.76
59961--60018
26
2.3
25
91
5
91
25
15
25
32
1.95
61882--61927
21
2.1
22
88
4
67
19
28
19
32
1.96
64511--64578
27
2.5
27
82
0
82
48
17
10
23
1.78
64566--64623
26
2.3
25
91
5
91
25
15
25
32
1.95
65769--65846
20
3.8
20
77
12
77
37
12
14
35
1.84
66662--66719
21
2.8
21
83
0
71
31
27
3
37
1.73
70911--70945
6
5.8
6
86
0
52
68
8
0
22
1.16
70909--70945
12
3.1
12
100
0
74
67
8
0
24
1.17

Tables:   1

The End!