genome.fa.s1926.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1926
Parameters: 2 7 7 80 10 50 1000
Length:  74475

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2269--2293	13	1.9	13	100	0	50	36	16	16	32	1.90
2248--2312	32	2.0	32	84	3	85	29	15	16	38	1.90
5173--5224	20	2.7	20	87	3	70	38	19	11	30	1.87
6708--6738	3	10.3	3	92	0	53	35	0	35	29	1.58
11280--11315	13	2.8	13	95	0	63	33	16	16	33	1.92
13643--13709	37	1.9	35	88	11	102	29	26	11	31	1.92
14169--14194	13	2.0	13	100	0	52	30	15	15	38	1.88
16070--16094	13	1.9	13	100	0	50	32	16	16	36	1.90
17034--17082	20	2.5	20	96	0	89	10	14	28	46	1.77
19267--19333	37	1.9	35	88	11	102	29	25	11	32	1.92
19793--19818	13	2.0	13	100	0	52	30	15	15	38	1.88
20421--20465	21	2.1	21	84	12	56	35	6	17	40	1.76
20585--20609	13	1.9	13	100	0	50	32	16	16	36	1.90
20710--20735	13	2.0	13	100	0	52	30	15	15	38	1.88
20690--20757	33	2.1	32	91	2	109	35	19	13	32	1.90
24461--24676	60	3.8	59	72	17	186	36	12	24	26	1.92
24496--24700	110	1.9	105	89	5	311	36	13	25	24	1.92
24626--24759	48	2.7	49	80	10	155	35	16	23	23	1.95
24520--24753	52	4.5	52	75	15	196	35	15	23	24	1.94
24689--24830	71	2.0	71	95	0	257	38	17	20	23	1.93
24948--25533	33	18.2	32	83	3	633	20	16	33	29	1.95
24948--25533	64	9.1	64	81	6	598	20	16	33	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25525--25716	33	6.1	32	74	11	162	36	10	29	22	1.88
25534--25715	65	2.9	64	79	8	203	36	11	29	21	1.89
25559--25722	33	5.0	33	78	6	172	38	10	29	21	1.87
25630--25750	33	3.9	29	75	18	93	32	15	30	21	1.95
25845--25964	31	4.0	30	74	14	95	35	13	25	25	1.93
34437--34499	32	1.9	32	87	6	90	42	12	15	28	1.84
38547--38577	15	2.1	15	93	0	53	48	16	22	12	1.80
40659--40696	13	2.9	13	96	0	67	34	18	15	31	1.92
40808--40853	21	2.2	20	81	11	58	32	19	4	43	1.71
42304--42346	22	2.0	20	82	8	50	16	9	16	58	1.63
42458--42547	45	2.0	45	100	0	180	37	6	15	40	1.74
43288--43313	13	2.0	13	100	0	52	38	15	15	30	1.88
43270--43334	32	2.0	32	87	6	94	43	15	13	27	1.85
45998--46067	33	2.1	33	81	5	79	32	14	15	37	1.88
47637--47688	19	2.7	20	87	6	79	42	15	13	28	1.85
53166--53220	20	2.7	21	85	2	76	38	12	18	30	1.88
53249--53300	19	2.7	20	87	6	79	42	15	13	28	1.85
58867--58918	19	2.7	20	87	6	79	42	15	13	28	1.85
60070--60102	15	2.2	15	94	0	57	42	0	27	30	1.56
61288--61335	24	2.0	24	100	0	96	54	8	29	8	1.60
68371--68423	19	2.7	20	85	8	72	28	13	18	39	1.88
68371--68429	19	3.0	18	80	14	64	25	11	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70466--70508	20	2.1	20	86	4	59	9	30	44	16	1.79
70948--70985	13	2.9	13	96	0	67	31	15	18	34	1.92

Tables:   1

The End!