genome.fa.s1929.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1929
Parameters: 2 7 7 80 10 50 1000
Length:  264168

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214729--214853	52	2.4	52	94	0	214	36	18	17	27	1.93
222159--222199	21	2.0	21	90	0	64	87	7	4	0	0.65
223140--223221	30	2.7	31	90	1	121	25	26	18	29	1.98
223198--223780	61	8.9	62	80	12	495	20	34	12	32	1.90
223232--223283	27	1.9	27	96	0	95	23	38	17	21	1.93
223262--223785	34	15.7	34	80	12	511	20	34	12	32	1.90
223195--223785	131	4.5	132	77	16	497	20	34	12	32	1.90
223136--223753	97	6.3	95	80	11	580	20	33	13	32	1.91
223623--223676	27	2.0	27	92	0	90	22	40	14	22	1.90
223651--223785	35	3.9	34	83	9	155	19	30	11	38	1.87
223649--223792	36	4.1	34	81	7	155	18	32	11	38	1.86
223656--223805	71	2.1	70	84	6	187	20	33	11	34	1.88
223790--223859	33	2.1	35	91	5	117	25	35	17	21	1.95
223859--224476	49	12.9	49	76	11	600	25	24	17	32	1.96
223854--224414	92	6.0	92	90	4	870	24	24	17	32	1.97
223854--224476	195	3.2	194	93	2	987	25	24	17	32	1.96
225266--225290	13	1.9	13	100	0	50	36	16	16	32	1.90
225247--225315	33	2.1	33	86	0	93	36	11	13	39	1.80
225356--225380	13	1.9	13	100	0	50	32	16	16	36	1.90
225389--225513	52	2.4	52	95	0	223	36	18	17	28	1.94
228625--228797	33	5.8	28	72	18	107	24	27	12	35	1.92
228647--229423	33	23.9	33	79	6	739	19	29	12	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229420--229928	48	10.8	48	72	12	369	24	25	17	32	1.97
229479--229832	87	3.9	87	82	6	368	25	25	18	30	1.98
229653--229928	49	5.6	49	78	5	272	23	25	17	33	1.96
231154--231178	13	1.9	13	100	0	50	36	16	16	32	1.90
231227--231254	13	2.2	13	100	0	56	28	14	17	39	1.89
231207--231272	33	2.0	33	85	5	89	30	15	13	40	1.85
237591--237615	13	1.9	13	100	0	50	36	16	16	32	1.90
237711--237835	52	2.4	52	91	2	207	36	17	18	28	1.94
245436--245938	31	15.9	31	75	15	232	21	34	13	30	1.92
245568--246066	34	15.6	33	72	16	265	21	34	13	30	1.92
245639--245851	61	3.4	61	82	9	266	20	34	12	32	1.90
245568--246030	163	2.9	156	81	11	475	21	34	13	30	1.92
246112--246763	49	13.6	49	87	6	919	25	25	17	30	1.97
246112--246772	141	4.6	141	89	5	1010	25	26	17	31	1.97
246673--246794	52	2.3	53	84	4	165	25	23	13	36	1.92
247835--247959	52	2.4	52	94	2	216	35	18	18	28	1.94
254525--254671	50	2.9	51	79	6	172	37	10	23	29	1.87
254686--254956	128	2.1	131	81	4	309	35	10	23	29	1.89
254813--255092	79	3.6	78	81	3	314	33	11	25	30	1.91
254589--255036	207	2.2	210	81	4	514	36	11	22	29	1.90
259927--259974	17	2.8	18	87	6	64	83	2	14	0	0.74
259927--259974	25	1.9	25	87	8	71	83	2	14	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259927--259974	12	3.9	12	84	10	62	83	2	14	0	0.74
259925--259980	25	2.2	25	78	6	69	76	1	17	3	1.01
262272--262297	13	2.0	13	100	0	52	30	15	15	38	1.88
262252--262315	33	2.0	33	90	3	103	26	14	17	42	1.87

Tables:   1   2

The End!