Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1961
Parameters: 2 7 7 80 10 50 1000
Length:  173942

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123065--123115
21
2.5
21
81
12
61
45
0
0
54
0.99
124118--124160
16
2.6
16
77
3
50
41
0
0
58
0.98
124060--124160
32
3.1
32
78
16
111
45
0
1
52
1.12
124141--124211
13
5.7
13
77
15
69
32
0
1
66
1.01
124229--124275
10
4.8
10
78
5
51
42
0
0
57
0.98
124292--124353
30
2.1
30
96
0
115
24
6
11
58
1.56
124511--124570
26
2.1
29
82
11
72
35
3
0
61
1.12
124564--124624
18
3.4
17
79
16
70
45
0
0
54
1.00
124568--124627
27
2.2
28
81
3
68
46
0
0
53
1.00
124571--124627
20
3.1
19
78
17
66
49
0
0
50
1.00
125175--125244
36
1.9
36
83
11
90
50
0
0
50
1.00
126442--126479
11
3.2
12
82
17
53
31
0
0
68
0.90
126505--126576
33
2.2
33
83
11
87
40
1
4
54
1.28
126547--126616
19
3.6
18
76
21
54
35
1
1
61
1.14
126993--127049
5
12.2
5
72
20
52
38
0
0
61
0.96
126943--127032
20
4.8
19
73
19
73
43
1
0
55
1.07
126993--127039
18
2.5
20
89
6
71
38
0
0
61
0.96
127008--127049
13
3.2
13
77
16
50
40
0
0
59
0.97
127284--127355
2
36.5
2
75
10
51
41
1
8
48
1.42
127284--127384
51
2.0
51
98
0
193
38
2
11
46
1.56
127604--127638
12
3.1
12
92
8
56
40
0
0
60
0.97
127665--127707
10
4.2
10
84
3
50
51
4
0
44
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127955--128013
25
2.5
24
75
22
61
44
0
0
55
0.99
127966--128016
26
2.0
26
88
11
79
49
0
0
50
1.00
128397--128438
10
4.1
10
79
14
50
57
0
0
42
0.99
128405--128485
20
3.9
21
75
13
87
56
0
0
43
0.99
128441--128472
15
2.1
15
94
0
55
50
0
0
50
1.00
132896--132937
16
2.8
16
85
7
61
40
0
0
59
0.97
132868--132928
33
1.9
30
87
9
86
39
0
0
60
0.97
133015--133049
15
2.2
16
90
10
54
57
0
0
42
0.99
136121--136161
21
2.0
21
90
9
66
41
0
0
58
0.98
136727--136828
33
3.1
33
74
21
99
47
0
2
49
1.23
137203--137278
27
2.9
27
75
7
75
43
0
0
56
0.99
137247--137307
5
12.8
5
73
16
58
37
0
0
62
0.96
137247--137307
16
3.6
16
74
12
59
37
0
0
62
0.96
137246--137294
21
2.2
22
89
7
73
36
0
0
63
0.95
137245--137305
13
5.2
12
79
18
67
37
0
0
62
0.96
137209--137304
39
2.4
40
78
15
101
42
0
0
57
0.98
137785--137844
22
2.6
24
74
10
63
53
0
0
46
1.00
137854--137896
10
4.2
10
84
3
50
51
4
0
44
1.22
138080--138131
22
2.4
22
75
12
54
40
0
0
59
0.97
138682--138710
10
2.9
10
100
0
58
48
0
0
51
1.00
147272--147302
16
1.9
16
93
0
53
32
3
12
51
1.56
147272--147313
16
2.6
16
81
7
50
30
7
11
50
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
149196--149241
2
23.0
2
100
0
92
50
0
0
50
1.00
151700--151801
24
4.2
24
75
5
82
24
19
34
21
1.96
151714--151808
48
2.0
48
83
4
120
23
18
35
22
1.96
151790--151885
27
3.6
27
75
13
99
27
14
32
26
1.95
151788--151899
27
4.1
27
74
8
95
25
14
33
26
1.94
155500--155585
19
4.6
20
74
22
71
59
2
1
37
1.18
161005--161035
16
1.9
16
93
0
53
45
0
0
54
0.99
161902--161959
30
1.9
30
86
6
82
41
1
1
55
1.20
162780--162813
18
1.9
18
88
5
52
23
0
0
76
0.79
162852--162886
18
1.9
18
88
0
52
65
0
0
34
0.93
168703--168762
32
1.9
31
96
3
111
66
5
1
26
1.21
168703--168762
31
1.9
32
93
3
104
66
5
1
26
1.21
171632--171676
22
2.0
22
86
4
63
33
8
2
55
1.43
171830--171854
2
12.5
2
100
0
50
52
0
0
48
1.00
173411--173460
23
2.0
26
81
11
61
0
66
22
12
1.24
173654--173687
11
3.1
11
91
0
50
0
82
0
17
0.67

Tables:   1   2

The End!