Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1966
Parameters: 2 7 7 80 10 50 1000
Length:  403291

Tables:   1   2   3   

This is table  3  of  3  ( 285 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
333503--333543
16
2.5
17
88
7
59
80
4
0
14
0.87
335245--335288
23
2.0
21
83
12
54
65
15
0
18
1.27
335612--335777
51
3.3
50
84
6
210
36
9
22
31
1.85
335716--335944
108
2.1
107
84
3
298
32
16
23
27
1.96
335874--335947
28
2.6
28
86
0
94
28
18
27
25
1.98
335935--336072
49
2.7
51
74
4
145
37
11
20
30
1.88
338430--338483
20
2.7
20
91
5
83
42
14
16
25
1.87
338397--338466
33
2.1
33
84
5
88
41
11
15
31
1.83
338499--338528
13
2.3
13
94
0
51
40
10
16
33
1.82
344299--344331
18
1.9
17
88
11
50
42
15
12
30
1.83
344867--344891
2
12.5
2
100
0
50
52
0
0
48
1.00
344891--344945
2
27.5
2
92
7
94
50
1
47
0
1.11
347632--347657
6
4.3
6
100
0
52
30
0
0
69
0.89
348943--348968
3
8.7
3
100
0
52
65
0
0
34
0.93
350461--350507
20
2.3
20
85
7
60
31
4
2
61
1.27
350844--350885
22
1.9
22
90
9
68
61
0
0
38
0.96
351321--351388
25
2.8
24
72
16
59
26
10
5
57
1.55
353240--353314
20
3.8
20
80
0
87
33
12
12
42
1.79
353240--353317
40
2.0
39
87
2
111
33
11
12
42
1.79
354225--354275
22
2.3
22
100
0
102
19
11
9
58
1.60
355886--355912
13
2.1
13
100
0
54
55
0
0
44
0.99
363635--363675
20
2.0
20
100
0
82
26
4
14
53
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
363639--363683
20
2.2
20
92
0
72
24
4
13
57
1.54
363635--363686
20
2.7
20
90
3
70
26
3
13
55
1.55
364631--364655
2
12.5
2
100
0
50
52
0
0
48
1.00
365375--365415
22
1.9
21
85
5
55
63
2
7
26
1.33
374829--374975
76
1.9
76
85
0
204
24
12
20
42
1.87
377308--377357
22
2.3
22
96
0
91
16
12
12
60
1.60
380097--380126
2
15.0
2
100
0
60
50
0
0
50
1.00
382641--382704
32
2.0
33
87
3
94
40
17
15
26
1.89
383904--383955
27
1.9
27
92
0
86
48
11
23
17
1.79
384458--384706
107
2.3
107
81
2
302
32
16
24
27
1.96
384583--384655
28
2.6
28
91
0
110
23
21
32
21
1.98
384646--384810
51
3.2
51
77
6
165
33
13
24
28
1.93
387139--387243
20
5.8
20
75
24
117
40
13
17
28
1.87
387139--387239
35
2.9
36
85
11
156
40
13
16
28
1.87
387193--387222
13
2.3
13
94
0
51
43
16
10
30
1.81
387143--387242
33
3.0
33
89
7
148
41
14
16
29
1.87
387119--387259
20
7.7
19
75
21
115
41
12
16
29
1.85
387275--387304
13
2.3
13
94
0
51
43
10
16
30
1.81
387288--387342
20
2.8
20
91
0
92
45
14
14
25
1.83
391204--391243
20
2.0
20
95
0
71
35
7
10
47
1.65
392568--392622
27
2.0
27
92
0
92
49
10
25
14
1.76
393274--393332
16
3.7
16
72
21
52
45
1
3
49
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
397830--397893
29
2.2
29
82
0
74
43
7
7
40
1.62

Tables:   1   2   3

The End!