genome.fa.s1967.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1967
Parameters: 2 7 7 80 10 50 1000
Length:  158123

Tables:   1   2   

This is table  2  of  2  ( 147 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132087--132123	11	3.4	11	96	0	65	0	13	0	86	0.57
132080--132129	15	3.3	15	86	5	66	0	18	0	82	0.68
132079--132123	23	2.1	21	88	12	65	0	15	0	84	0.62
132770--133856	166	6.5	167	87	3	1437	50	9	12	27	1.71
135099--135367	83	3.2	83	78	12	228	43	14	23	18	1.87
135454--135822	83	4.4	83	83	3	366	34	14	29	21	1.93
135448--135822	167	2.2	167	81	2	414	34	14	29	21	1.93
136109--137203	85	12.9	85	73	8	645	32	19	27	20	1.97
136107--137203	42	25.8	42	76	6	623	32	19	27	20	1.97
137200--137244	22	2.0	22	91	0	72	44	8	26	20	1.80
136949--137497	277	2.0	275	80	9	609	32	18	28	20	1.96
137233--137516	42	6.7	42	74	5	169	32	18	28	20	1.97
138341--138367	13	2.1	13	100	0	54	40	14	14	29	1.86
142253--142292	16	2.5	15	84	11	53	37	10	0	52	1.35
145302--145333	15	2.1	15	94	0	55	28	28	0	43	1.55
146887--146953	33	2.0	33	88	5	100	32	17	13	35	1.89
146908--146933	13	2.0	13	100	0	52	38	15	15	30	1.88
146982--147037	19	2.9	19	91	2	94	35	14	19	30	1.91
147446--147531	42	2.0	42	86	4	120	34	19	29	16	1.94
147506--148144	43	14.9	43	82	1	636	36	18	29	15	1.92
148210--148355	42	3.5	42	75	1	150	35	21	30	12	1.90
148479--148635	44	3.6	44	68	5	129	40	15	22	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148477--148643	88	1.9	88	86	2	237	40	14	22	22	1.91
148479--148662	88	2.1	88	83	4	228	40	14	24	20	1.90
154238--154672	160	2.7	156	77	8	439	39	20	15	24	1.91
154558--155039	152	3.1	152	74	12	433	37	20	17	24	1.94
157330--157367	16	2.4	16	86	0	58	57	0	15	26	1.38

Tables:   1   2

The End!