genome.fa.s1987.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1987
Parameters: 2 7 7 80 10 50 1000
Length:  242289

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133120--133161	21	2.0	21	86	9	59	21	4	0	73	1.01
136517--136563	20	2.3	21	92	7	87	27	36	4	31	1.76
147226--147268	21	2.1	21	91	4	70	4	16	4	74	1.16
149544--149646	53	1.9	54	84	5	138	38	26	12	22	1.90
149641--149678	16	2.4	16	90	0	58	50	18	13	18	1.78
149651--149696	16	2.8	16	90	3	65	45	26	13	15	1.82
151247--151298	20	2.6	20	84	0	68	32	13	15	38	1.86
151347--151385	20	2.0	20	94	0	69	25	17	15	41	1.89
162516--162701	92	2.0	95	84	4	243	29	13	5	51	1.64
174502--174549	22	2.2	22	88	3	71	18	20	16	43	1.88
174818--174857	14	2.9	14	80	0	53	50	0	0	50	1.00
175670--175715	6	7.2	6	97	2	65	78	0	0	21	0.76
180471--180630	6	27.3	6	65	18	54	76	1	17	5	1.03
180466--180556	24	3.8	24	75	15	71	74	0	20	4	0.98
180471--180579	19	5.8	18	74	14	87	77	0	17	4	1.00
180481--180608	42	3.1	40	78	10	116	78	1	14	6	1.02
180517--180564	25	1.9	25	83	8	62	77	2	12	8	1.08
180482--180583	11	8.9	11	69	17	50	77	0	16	4	1.00
183296--183330	17	2.1	17	100	0	70	51	0	0	48	1.00
183346--183438	36	2.6	37	76	13	104	38	6	3	51	1.44
183572--183616	23	1.9	24	82	13	58	57	4	4	33	1.38
184366--184393	1	28.0	1	100	0	56	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184764--184793	2	15.0	2	100	0	60	50	0	0	50	1.00
187948--187983	2	18.5	2	88	5	56	47	0	0	52	1.00
193015--193041	2	13.5	2	100	0	54	48	0	0	51	1.00
197920--197957	18	2.1	18	95	0	67	28	5	13	52	1.61
200602--200652	18	2.8	18	81	18	61	78	0	3	17	0.90
200602--200652	10	5.6	9	76	9	50	78	0	3	17	0.90
200733--200908	57	3.0	57	89	5	246	21	19	17	41	1.90
201203--201242	20	2.0	20	90	0	62	40	0	42	17	1.49
201295--201364	24	2.8	25	89	6	99	44	25	8	21	1.80
201297--201419	25	4.7	27	81	8	96	45	25	6	22	1.76
201349--201417	27	2.5	27	86	6	86	46	23	5	24	1.74
205889--205958	24	2.8	25	89	6	99	44	25	8	21	1.80
205943--206013	27	2.6	27	88	6	99	46	23	7	22	1.76
205891--206016	24	4.9	24	77	12	92	46	25	7	21	1.77
206136--206287	73	2.1	74	92	2	261	53	19	19	7	1.69
207084--207135	19	2.8	19	88	2	70	50	32	11	5	1.62
209988--210066	21	3.8	20	81	11	88	31	13	13	40	1.85
212877--212912	10	3.7	10	88	3	56	0	0	11	88	0.50
212877--212910	15	2.4	14	95	5	59	0	0	8	91	0.43
220184--220234	20	2.8	18	85	11	68	35	11	11	41	1.78
222518--222573	29	2.0	29	89	3	87	25	14	50	10	1.75
226021--226096	20	3.8	20	75	6	82	31	13	14	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227005--227061	23	2.5	23	100	0	114	17	10	8	63	1.51
227013--227068	23	2.6	21	86	8	51	19	8	8	62	1.51
240119--240172	12	4.6	12	88	2	83	88	9	1	0	0.58
240119--240172	23	2.3	24	93	3	92	88	9	1	0	0.58
240119--240179	1	61.0	1	78	0	59	88	8	3	0	0.61
241374--242289	28	32.2	28	84	6	1094	27	32	19	20	1.97
241374--242289	113	8.0	112	84	6	1103	27	32	19	20	1.97
241375--242289	141	6.4	139	84	6	1079	27	32	19	20	1.97

Tables:   1   2

The End!