Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2001
Parameters: 2 7 7 80 10 50 1000
Length:  25485

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
950--1029
17
4.8
17
74
10
67
67
2
3
26
1.20
1167--1191
3
8.3
3
100
0
50
32
0
0
68
0.90
1345--1383
20
2.0
20
89
0
60
35
0
7
56
1.28
1389--1429
14
2.9
15
80
20
52
48
0
2
48
1.14
1869--1893
2
12.5
2
100
0
50
48
0
0
52
1.00
2658--2745
46
1.9
46
83
0
113
42
11
4
42
1.61
3001--3044
23
2.0
22
82
13
54
50
2
9
38
1.47
3460--3488
3
9.7
3
100
0
58
68
0
0
31
0.89
7465--7503
12
3.0
13
88
11
62
69
0
0
30
0.89
7481--7533
16
3.2
17
74
17
58
58
0
0
41
0.98
7467--7539
31
2.3
31
81
11
78
58
0
1
39
1.06
7485--7526
15
2.7
15
82
10
50
57
0
0
42
0.99
7486--7546
32
2.0
29
87
9
86
50
0
1
47
1.10
9922--10014
18
5.0
18
69
19
57
59
3
0
37
1.14
11483--11522
17
2.2
17
86
8
53
37
0
0
62
0.95
11496--11532
19
1.9
19
88
0
56
37
0
0
62
0.96
12261--12303
21
2.0
21
86
9
59
37
0
9
53
1.33
12846--12874
3
9.7
3
100
0
58
68
0
0
31
0.89
19089--19176
13
6.8
13
71
23
62
62
2
1
34
1.15
19074--19190
24
5.0
23
72
20
77
63
2
0
33
1.14
19089--19148
11
5.0
12
78
12
52
65
1
0
33
1.03
19150--19191
8
5.1
8
80
13
50
59
2
2
35
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19150--19191
15
2.5
17
85
11
52
59
2
2
35
1.23
20316--20382
29
2.3
29
78
19
77
62
1
4
31
1.24
20421--20458
15
2.6
15
88
12
53
60
0
0
39
0.97
21269--21308
19
2.1
19
86
9
55
50
0
0
50
1.00
21268--21328
26
2.4
25
86
5
77
54
0
0
45
1.00
21509--21573
14
4.6
14
75
21
64
27
1
0
70
0.96
21503--21557
26
2.0
26
89
6
83
32
0
0
67
0.91
21505--21573
28
2.6
26
80
8
77
27
1
0
71
0.95

Tables:   1

The End!