genome.fa.s2009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2009
Parameters: 2 7 7 80 10 50 1000
Length:  39610

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2813--2884	28	2.6	28	88	0	99	23	19	34	22	1.96
2873--3042	52	3.3	50	79	11	182	32	12	24	29	1.93
3016--3095	27	3.0	28	78	14	87	27	21	28	22	1.99
5511--5536	13	2.0	13	100	0	52	38	15	15	30	1.88
5490--5556	33	2.0	33	88	0	98	43	16	14	25	1.86
5576--5643	19	3.9	18	76	23	83	38	14	11	35	1.83
5598--5622	13	1.9	13	100	0	50	32	16	16	36	1.90
5579--5641	32	2.0	32	96	0	117	36	15	12	34	1.86
5699--5755	21	2.7	21	97	0	105	36	19	10	33	1.86
6010--6660	27	21.7	27	78	14	519	32	14	32	21	1.93
6185--6660	28	16.0	27	79	13	376	32	14	32	21	1.93
5987--6545	89	6.2	89	84	9	663	32	13	33	21	1.92
6005--6660	238	2.7	237	84	10	820	32	14	32	20	1.93
5974--6638	272	2.5	266	81	13	786	32	13	32	20	1.92
7866--7895	16	1.9	15	93	6	51	0	0	10	90	0.47
14227--14281	20	2.8	20	88	5	76	38	12	16	32	1.86
14311--14363	21	2.7	20	85	8	72	33	16	15	33	1.90
17275--17444	51	3.2	51	68	23	136	40	7	21	30	1.80
17204--17344	75	1.9	76	86	4	205	39	10	19	30	1.85
17378--17713	158	2.1	155	84	6	419	39	8	19	31	1.83
17377--17714	78	4.3	79	80	6	348	39	8	19	31	1.83
17669--17743	28	2.7	29	79	6	84	32	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20234--20309	31	2.5	31	93	0	125	40	13	15	30	1.86
32305--32539	97	2.4	97	85	2	321	29	14	28	28	1.95
33533--33582	22	2.3	22	100	0	100	38	4	4	54	1.38
35349--36159	28	28.4	27	82	7	778	24	17	29	29	1.97
35349--36159	56	14.2	56	84	5	878	24	17	29	29	1.97

Tables:   1

The End!