genome.fa.s2039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2039
Parameters: 2 7 7 80 10 50 1000
Length:  245426

Tables:   1   2   

This is table  1  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958--999	2	21.0	2	100	0	84	50	0	0	50	1.00
1236--1319	27	3.1	27	73	24	72	46	0	0	53	1.00
1243--1308	22	3.1	21	81	14	73	43	0	0	56	0.99
1244--1309	21	3.0	23	85	10	77	45	0	0	54	0.99
2005--2101	24	3.9	24	70	13	79	44	4	2	49	1.33
2003--2111	53	2.1	52	87	6	157	43	3	1	51	1.30
2641--2683	3	14.3	3	95	0	77	30	0	2	67	1.03
2865--2913	20	2.6	18	78	12	53	38	2	4	55	1.31
4596--4633	8	4.8	8	87	9	51	78	2	5	13	1.02
7075--7113	20	2.0	20	89	0	60	20	5	0	74	1.01
9488--9513	12	2.2	12	100	0	52	57	0	0	42	0.98
10397--10432	17	2.1	17	89	0	54	55	2	2	38	1.29
11894--11953	18	3.3	18	88	0	84	38	6	10	45	1.64
13487--13539	23	2.3	23	80	9	63	39	1	0	58	1.09
14992--15209	34	6.5	34	84	5	273	40	26	7	25	1.82
14990--15209	67	3.3	67	87	1	314	40	26	7	25	1.82
19276--19338	19	3.3	19	90	0	90	34	19	17	28	1.94
19640--19855	34	6.4	34	84	5	269	40	26	7	25	1.83
19638--19855	67	3.2	67	87	1	310	40	27	7	24	1.82
20604--20631	4	7.0	4	100	0	56	25	25	50	0	1.50
23254--23331	30	2.5	30	80	13	88	51	1	0	47	1.09
23518--23556	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23733--23791	24	2.4	25	85	2	75	42	0	1	55	1.09
26258--26314	23	2.5	23	97	0	105	63	10	10	15	1.52
27226--27300	20	3.8	20	80	3	80	40	12	13	34	1.81
27223--27300	40	2.0	39	87	2	111	39	12	12	34	1.82
27636--27687	27	2.0	25	85	7	68	59	1	0	38	1.08
28160--28238	27	3.0	26	83	8	99	46	0	0	53	1.00
28170--28215	13	3.2	15	79	20	62	41	0	0	58	0.98
28144--28243	25	3.7	27	71	21	86	45	0	0	55	0.99
29366--29391	13	2.0	13	100	0	52	15	15	23	46	1.83
37324--37355	3	10.7	3	93	0	55	0	65	0	34	0.93
37354--37394	12	3.4	12	82	0	55	26	60	0	12	1.31
37461--37512	12	4.3	12	82	0	68	13	65	7	13	1.46
37420--37667	126	2.0	126	90	0	388	18	52	10	17	1.73
37588--37634	15	3.1	15	81	0	58	19	68	2	10	1.30
37648--37694	12	3.9	12	83	5	60	27	44	10	17	1.81
37707--37757	24	2.1	24	92	0	84	17	60	5	15	1.54
37846--37898	21	2.5	21	81	0	61	16	62	1	18	1.42
38844--38911	32	2.2	30	85	15	86	41	0	2	55	1.15
39725--39770	18	2.4	19	82	7	58	45	0	0	54	0.99
40135--40355	34	6.5	33	80	9	230	41	24	7	26	1.81
40135--40355	102	2.2	101	86	1	325	41	24	7	26	1.81
44177--44395	34	6.5	33	82	9	262	41	24	7	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44177--44395	102	2.2	101	89	1	357	41	24	7	26	1.82
46087--46205	60	2.0	60	81	3	141	37	8	12	41	1.73
48761--48801	20	2.0	20	85	0	55	53	0	2	43	1.13
49374--49415	16	2.6	17	85	11	61	28	4	14	52	1.62
50163--50196	12	2.7	13	86	9	52	64	0	0	35	0.94
50319--50356	19	2.0	19	94	0	67	55	7	5	31	1.51
54212--54243	2	16.0	2	100	0	64	50	0	0	50	1.00
58436--58475	19	2.2	19	95	4	73	27	7	5	60	1.45
58490--58551	25	2.5	25	82	12	83	38	1	4	54	1.31
58757--58810	16	3.3	15	77	22	56	40	0	1	57	1.09
58757--58820	32	1.9	34	87	12	98	42	0	1	56	1.09
58761--58838	32	2.3	34	82	8	97	42	2	1	53	1.22
59690--59742	26	2.0	27	85	3	72	56	1	0	41	1.10
60061--60127	27	2.4	27	80	12	73	2	22	1	73	1.06
61139--61174	18	2.0	18	94	0	63	44	2	0	52	1.15
61146--61172	14	1.9	14	100	0	54	44	0	0	55	0.99
65486--65541	20	2.8	20	78	8	60	55	8	7	28	1.57
66577--66616	21	1.9	21	90	10	64	60	0	0	40	0.97
66733--66765	17	2.1	17	88	11	52	45	0	0	54	0.99
66923--66961	19	2.0	20	85	14	55	53	2	0	43	1.14
66927--66998	27	2.6	27	76	8	74	50	5	1	43	1.34
67530--67584	28	2.0	27	82	3	65	52	1	1	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67624--67667	13	3.5	12	81	9	52	56	0	0	43	0.99
67621--67674	19	2.8	19	77	2	54	55	1	0	42	1.10
67945--67993	19	2.6	19	80	9	64	57	0	0	42	0.99
68584--68629	19	2.3	20	81	3	58	58	0	0	41	0.98
69101--69148	23	2.0	25	88	11	75	41	0	0	58	0.98
69707--69752	25	1.9	23	82	8	56	54	0	0	45	0.99
69785--69833	26	1.9	25	87	4	71	59	0	0	40	0.98
70251--70290	16	2.5	17	88	8	57	70	0	2	27	1.01
70707--70775	20	3.6	19	71	19	54	31	4	0	63	1.14
70748--70835	38	2.3	39	80	18	98	37	3	0	59	1.15
71374--71417	18	2.3	20	75	25	51	47	0	0	52	1.00
71411--71482	22	3.2	22	78	9	83	61	0	0	38	0.96
71431--71513	12	7.2	12	72	21	54	56	0	0	43	0.99
71447--71519	37	1.9	39	83	10	98	53	0	0	46	1.00
72113--72180	31	2.2	30	79	7	75	44	0	0	55	0.99
72356--72410	27	2.0	28	82	3	67	60	0	0	40	0.97
73472--73522	25	2.0	25	88	0	75	43	9	5	41	1.62
73569--73614	17	2.6	18	83	16	60	45	0	0	54	0.99
73892--73961	30	2.3	30	80	5	77	55	4	4	35	1.39
81305--81375	23	3.2	21	71	13	54	52	1	0	46	1.09
81528--81571	23	1.9	23	86	9	63	25	4	2	68	1.20
81681--81746	28	2.5	26	80	9	71	50	1	0	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81712--81772	16	3.9	16	76	8	72	45	3	0	50	1.17
81709--81780	30	2.3	33	90	7	114	45	2	0	51	1.15
84362--84463	50	2.0	50	94	0	177	31	10	16	41	1.83
84443--84486	22	2.0	22	95	0	79	36	6	4	52	1.49
84715--84768	26	2.0	27	85	3	74	44	9	5	40	1.60
85056--85100	18	2.5	18	81	0	63	33	2	2	62	1.20
88394--88430	14	2.7	14	80	19	51	37	0	0	62	0.96
89347--89444	51	1.9	52	89	6	155	48	1	1	48	1.14
91599--91646	22	2.1	23	85	11	64	52	2	4	41	1.32
92130--92172	21	2.0	21	90	0	68	23	11	20	44	1.84
92449--92483	18	1.9	18	94	0	61	28	48	17	5	1.69
93500--93569	22	3.3	23	82	11	78	34	0	1	64	1.03
93549--93596	14	3.1	14	75	18	51	41	0	0	58	0.98
93516--93572	22	2.6	22	88	5	80	36	0	1	61	1.07
99813--99859	16	2.8	16	84	12	58	57	4	0	38	1.18
100427--100476	22	2.3	21	80	12	57	58	0	0	42	0.98
101957--101983	2	13.5	2	100	0	54	51	0	0	48	1.00
103547--103585	2	19.5	2	100	0	78	51	0	0	48	1.00
104273--104303	2	15.5	2	100	0	62	48	0	0	51	1.00
104303--104334	2	16.0	2	100	0	64	0	0	50	50	1.00
104583--104639	24	2.3	25	79	11	64	45	1	0	52	1.11
104610--104658	18	2.7	19	75	12	50	51	2	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105329--105406	34	2.3	35	84	4	88	42	0	6	51	1.27
105350--105422	35	2.2	33	87	9	103	36	0	6	56	1.26
105340--105415	17	4.4	17	73	17	66	38	0	6	55	1.26
106221--106252	2	16.0	2	100	0	64	50	0	0	50	1.00
108047--108086	17	2.4	17	86	0	53	40	0	10	50	1.36
109112--109144	2	16.5	2	100	0	66	48	0	0	51	1.00
109311--109343	13	2.4	14	90	10	50	51	0	0	48	1.00
110727--110809	17	4.8	17	72	16	57	48	0	1	50	1.08
111173--111243	27	2.6	28	88	2	108	23	5	22	47	1.72
111340--111379	20	2.0	20	85	0	53	15	42	5	37	1.68

Tables:   1   2