genome.fa.s2039.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2039
Parameters: 2 7 7 80 10 50 1000
Length:  245426

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115760--115830	27	2.6	27	86	6	99	23	7	22	46	1.76
117136--117166	16	1.9	16	93	0	53	0	9	32	58	1.31
118192--118252	25	2.3	28	83	11	83	40	6	6	45	1.56
120893--120951	27	2.3	26	80	8	66	55	5	0	38	1.22
123121--123463	160	2.2	158	82	3	411	45	7	15	32	1.73
124005--124065	30	2.0	29	81	12	70	50	0	1	47	1.10
124745--124775	3	10.3	3	100	0	62	67	0	0	32	0.91
125130--125422	158	1.8	161	85	5	416	48	7	14	29	1.70
125702--125744	20	2.0	21	82	8	52	55	9	16	18	1.67
125887--125934	3	15.7	3	91	4	78	62	2	0	35	1.07
126001--126036	18	2.0	18	88	0	54	13	8	0	77	0.98
126908--126942	15	2.2	17	90	10	56	28	8	0	62	1.24
127799--128039	132	1.8	135	82	6	321	48	7	12	32	1.67
130071--130124	22	2.4	23	84	3	74	22	5	7	64	1.40
134696--134738	22	2.0	22	86	9	61	60	0	2	37	1.10
135884--135942	31	1.9	30	89	3	91	37	0	0	62	0.95
136123--136153	2	15.5	2	100	0	62	51	0	0	48	1.00
137364--137683	148	2.2	146	84	5	412	43	8	15	32	1.77
138596--138638	22	2.0	22	86	9	61	58	2	0	39	1.11
139587--139619	2	16.5	2	93	0	57	48	3	0	48	1.17
140017--140059	2	21.5	2	100	0	86	51	0	0	48	1.00
141329--141731	147	2.7	150	85	5	494	42	10	14	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144161--144199	18	2.1	19	90	4	62	51	5	5	38	1.46
144789--145090	156	1.9	156	83	4	383	45	8	14	31	1.76
145348--145386	20	1.9	20	84	5	51	58	10	15	15	1.62
145527--145565	3	12.7	3	89	5	60	66	0	0	33	0.92
145632--145666	17	2.0	18	88	5	54	14	8	0	77	0.99
149106--149156	24	2.1	24	100	0	102	25	7	17	49	1.74
150306--150375	24	2.8	24	77	14	70	45	22	10	21	1.81
150308--150404	27	3.7	27	80	4	101	45	23	9	21	1.81
150392--150449	26	2.3	25	88	5	82	25	13	25	34	1.93
154903--154972	24	2.8	24	77	14	70	45	22	10	21	1.81
154905--155001	27	3.7	27	80	4	101	45	23	9	21	1.81
154989--155046	26	2.3	25	88	5	82	25	13	25	34	1.93
156592--156626	17	2.0	18	88	5	54	71	17	8	2	1.23
156826--156868	22	2.0	22	90	9	70	60	0	0	39	0.97
158255--158279	2	12.5	2	100	0	50	52	0	0	48	1.00
159384--159641	140	1.9	137	85	4	356	44	10	13	31	1.76
159504--159989	150	3.2	153	83	6	635	43	7	15	33	1.76
160167--160210	2	22.0	2	100	0	88	50	0	0	50	1.00
162880--162921	14	3.0	14	73	13	50	59	0	0	40	0.97
168774--168816	22	2.0	22	90	9	70	60	0	0	39	0.97
170198--170226	2	14.5	2	100	0	58	51	0	0	48	1.00
170373--170415	15	2.8	16	85	7	61	58	18	0	23	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170893--170922	2	15.0	2	100	0	60	50	0	0	50	1.00
171332--171582	132	1.9	132	82	8	314	43	11	11	33	1.77
171511--171769	142	1.8	143	85	2	369	40	8	15	35	1.77
171939--171993	2	27.5	2	100	0	110	50	0	0	49	1.00
172697--172739	22	2.0	22	90	9	70	60	0	0	39	0.97
172833--172867	14	2.5	14	90	0	52	62	0	0	37	0.95
173163--173393	32	7.2	32	88	0	327	32	32	17	18	1.94
174636--174685	14	3.4	15	78	18	52	76	0	22	2	0.89
174633--174689	10	5.4	10	80	17	62	78	0	19	1	0.83
183381--183645	145	1.8	146	85	4	374	42	8	14	34	1.76
184545--184587	22	2.0	22	90	9	70	60	0	0	39	0.97
184680--184713	14	2.4	14	90	0	50	64	0	0	35	0.94
184735--184759	13	1.9	13	100	0	50	68	0	0	32	0.90
185216--185242	14	1.9	14	100	0	54	77	0	0	22	0.76
186140--186180	20	2.0	20	85	0	55	31	4	0	63	1.15
187324--187657	158	2.1	154	80	4	366	46	8	14	31	1.74
188083--188116	16	2.1	16	88	0	50	14	8	0	76	1.01
191745--191798	22	2.4	23	84	3	74	24	3	5	66	1.29
212682--212717	3	11.7	3	88	5	54	66	2	27	2	1.19
213346--213418	28	2.6	28	85	14	105	35	0	0	64	0.94
213410--213466	26	2.2	26	81	9	62	31	10	3	54	1.51
213416--213473	26	2.2	27	84	9	75	31	13	3	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215305--215337	16	2.1	16	94	0	57	24	21	6	48	1.72
218627--218661	2	17.5	2	93	0	61	48	0	2	48	1.16
223412--223459	7	6.4	7	81	11	51	50	0	2	47	1.12
223412--223459	23	2.1	22	85	11	62	50	0	2	47	1.12
224976--225035	22	2.9	21	70	22	54	56	0	0	43	0.99
231714--231788	20	3.8	20	80	3	80	40	12	13	34	1.81
231711--231788	40	2.0	39	87	2	111	39	12	12	34	1.82
232316--234008	32	54.2	32	94	1	2461	16	18	34	30	1.93
235240--235294	1	55.0	1	81	0	56	0	1	9	89	0.57
235247--235294	13	3.7	13	88	0	78	0	0	10	89	0.48

Tables:   1   2

The End!