Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2043
Parameters: 2 7 7 80 10 50 1000
Length:  49080

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3227--3272
10
4.7
10
84
15
60
10
13
0
76
1.03
3240--3290
26
2.0
25
88
3
75
13
11
0
74
1.07
3228--3271
19
2.3
18
81
11
52
11
13
0
75
1.06
17452--17533
41
2.0
41
86
9
114
32
19
8
39
1.82
18932--18988
22
2.5
23
82
2
71
36
7
15
40
1.75
22634--22849
20
9.7
20
70
20
135
42
11
15
30
1.82
22634--22810
51
3.7
48
74
16
181
43
10
15
30
1.80
22634--22860
91
2.5
91
92
1
366
42
11
15
29
1.82
23547--23724
48
3.8
48
91
1
252
34
17
27
20
1.95
23641--23713
25
3.1
24
65
15
62
31
17
28
21
1.97
23664--23733
21
3.1
22
67
15
61
32
14
30
22
1.94
23547--23758
48
4.5
47
90
1
250
33
18
26
20
1.96
23872--28286
28
157.0
28
81
5
3993
24
16
27
30
1.97
23872--29326
56
96.1
56
81
6
5604
24
16
28
30
1.97
23872--29256
84
63.2
84
81
7
5624
24
16
28
30
1.97
27665--27742
39
2.0
39
87
5
113
24
20
26
28
1.99
27816--27893
39
2.0
39
87
0
111
23
21
28
26
1.99
28248--28325
39
2.0
39
92
0
129
23
21
28
26
1.99
28287--29273
28
34.8
29
80
10
1007
23
17
29
30
1.97
28220--28353
67
2.0
67
89
5
209
23
19
29
28
1.98
28730--29365
28
22.6
28
81
8
128
22
16
30
30
1.96
40756--40820
27
2.4
27
89
5
96
23
7
23
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45334--45455
27
4.7
26
78
8
74
21
6
25
46
1.75
45334--45403
27
2.6
27
84
4
79
22
5
22
48
1.72
45361--45457
24
3.9
24
76
14
97
20
9
25
44
1.81
47129--47159
15
2.1
15
100
0
62
35
25
6
32
1.82

Tables:   1

The End!