genome.fa.s2071.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2071
Parameters: 2 7 7 80 10 50 1000
Length:  45480

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225--250	13	2.0	13	100	0	52	30	15	15	38	1.88
1920--1988	29	2.5	28	79	6	70	26	27	15	30	1.96
5382--5429	9	5.4	8	77	22	51	81	0	14	4	0.84
5386--5428	19	2.3	19	84	11	61	81	0	13	4	0.84
6301--6741	163	2.7	162	86	3	593	36	9	12	41	1.76
9154--9287	50	2.7	50	88	0	187	26	17	14	41	1.89
9247--9286	20	2.0	21	90	5	64	27	20	15	37	1.92
11607--11632	13	2.0	13	100	0	52	30	15	15	38	1.88
11587--11650	32	2.0	33	90	3	103	28	14	15	42	1.86
16274--16304	15	2.1	15	93	0	53	12	22	16	48	1.80
19041--19333	157	1.9	158	83	5	387	26	23	12	37	1.91
19026--19302	79	3.5	78	79	4	299	27	24	13	34	1.93
21372--21403	12	2.7	12	90	0	55	21	6	0	71	1.07
23858--23916	32	1.9	30	83	13	75	59	10	10	20	1.58
24197--24222	13	2.0	13	100	0	52	30	15	15	38	1.88
26783--26820	13	2.9	13	96	0	67	31	15	18	34	1.92
28394--28431	15	2.5	15	91	0	58	13	21	15	50	1.78
30233--30277	21	2.1	21	84	8	56	22	20	4	53	1.63
32158--32216	32	1.9	30	83	13	75	59	10	10	20	1.58
38167--38193	13	2.1	13	100	0	54	40	14	14	29	1.86
38256--38288	13	2.5	13	100	0	66	51	15	12	21	1.75
40797--40837	13	3.0	13	85	7	55	34	17	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40958--41003	21	2.2	20	81	11	58	32	19	4	43	1.71
43393--43418	13	2.0	13	100	0	52	38	15	15	30	1.88
44984--45052	33	2.1	33	91	0	111	23	21	21	33	1.97

Tables:   1

The End!