genome.fa.s208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold208
Parameters: 2 7 7 80 10 50 1000
Length:  228481

Tables:   1   2   

This is table  1  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2767--2828	29	2.1	29	85	14	83	46	12	8	32	1.71
2775--2839	29	2.3	27	80	17	69	49	12	7	30	1.68
7708--7746	20	2.0	20	89	0	60	43	10	15	30	1.80
16266--16311	24	1.9	24	95	0	83	32	17	13	36	1.88
16296--16380	28	3.0	28	84	0	107	38	16	9	35	1.81
17562--17617	19	2.8	20	86	2	78	32	16	14	37	1.88
17558--17618	20	3.1	19	79	6	77	34	14	14	36	1.87
24446--24498	19	2.7	21	88	8	76	26	15	16	41	1.88
24564--24609	13	3.5	13	82	5	65	34	13	15	36	1.86
24566--24606	14	3.0	14	89	7	66	36	12	14	36	1.84
30492--30517	13	2.0	13	100	0	52	30	15	15	38	1.88
30472--30535	32	2.0	33	87	3	94	28	15	15	40	1.88
32027--32069	20	2.1	20	82	4	50	11	25	41	20	1.86
32501--32538	13	2.9	13	92	0	58	34	15	15	34	1.90
34623--34653	15	2.1	15	93	0	53	12	22	16	48	1.80
38885--38909	13	1.9	13	100	0	50	36	16	16	32	1.90
38865--38931	33	2.0	33	88	0	98	34	11	13	40	1.81
38974--38998	13	1.9	13	100	0	50	32	16	16	36	1.90
39007--39130	51	2.4	52	93	1	205	35	16	17	29	1.93
42296--42321	13	2.0	13	100	0	52	30	15	15	38	1.88
42276--42339	32	2.0	33	90	3	103	28	14	15	42	1.86
43821--43859	2	19.0	2	94	5	69	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45241--45287	21	2.2	20	79	17	51	48	2	0	48	1.13
45581--45608	14	2.0	14	100	0	56	35	0	0	64	0.94
45671--45818	20	7.5	20	70	19	80	39	4	7	49	1.50
45643--45923	75	3.8	74	81	6	286	38	4	9	48	1.55
45683--45745	21	3.0	20	79	11	54	41	1	9	47	1.45
51010--51054	17	2.6	17	86	10	65	68	0	0	31	0.89
59271--59371	20	5.2	20	69	11	75	39	6	2	50	1.44
69854--70140	50	5.6	49	71	12	175	28	26	13	31	1.94
70025--70141	51	2.3	51	85	5	166	29	29	12	28	1.93
70076--70294	79	2.8	78	78	10	248	27	25	14	33	1.94
92769--93008	29	8.3	29	81	9	226	31	31	17	19	1.95
92765--93008	86	2.8	87	78	10	250	31	31	16	20	1.95
93048--93115	21	3.2	21	62	25	52	23	26	19	30	1.98
93030--93394	43	8.1	43	79	11	372	24	24	18	32	1.97
93113--93391	49	5.9	49	78	11	305	23	24	18	33	1.97
93070--93394	92	3.5	92	94	0	533	23	24	18	33	1.97
93030--93394	184	2.0	178	88	3	541	24	24	18	32	1.97
94301--94356	20	2.8	20	89	5	78	32	14	12	41	1.83
97206--97237	3	10.7	3	93	0	55	28	34	0	37	1.57
97201--97239	12	3.2	12	88	0	60	23	33	0	43	1.54
98721--98787	33	2.0	33	85	5	91	31	14	10	43	1.80
100474--101187	357	2.0	358	98	0	1367	37	15	19	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103949--104069	52	2.3	52	97	0	224	28	18	18	34	1.94
103949--104089	52	2.7	51	90	4	212	30	17	18	33	1.94
104078--104102	13	1.9	13	100	0	50	36	16	16	32	1.90
104168--104192	13	1.9	13	100	0	50	32	16	16	36	1.90
105755--106630	165	5.3	166	86	3	1113	29	10	7	52	1.62
105755--106638	331	2.7	333	86	3	1207	29	10	7	52	1.62
107588--107671	20	3.8	20	73	19	78	25	20	14	40	1.90
107589--107720	50	2.7	48	90	5	196	26	19	15	38	1.91
117789--117937	76	2.0	76	97	0	280	36	19	13	30	1.90
120945--120998	22	2.5	21	91	5	90	38	11	24	25	1.88
122684--122722	18	2.1	19	85	4	53	46	10	10	33	1.72
124181--124233	21	2.5	21	87	0	70	16	20	0	62	1.33
124674--124704	9	3.4	9	90	0	53	22	32	0	45	1.53
126263--126313	22	2.3	22	89	0	75	41	17	17	23	1.90
130837--130954	41	2.9	40	81	7	148	18	21	11	48	1.80
131237--131606	65	5.7	65	80	3	327	19	21	12	46	1.83
131237--131724	130	3.9	130	76	9	390	19	21	12	46	1.83
131408--131518	31	3.5	31	71	11	89	18	25	13	43	1.86
131386--131480	31	2.9	34	69	15	90	18	26	10	44	1.82
131200--131599	195	2.1	195	80	3	439	19	22	13	45	1.84
131505--131722	115	1.9	115	84	5	298	19	21	12	46	1.82
132016--132058	19	2.5	17	85	11	52	25	2	2	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132607--132657	20	2.6	19	84	9	66	25	1	17	54	1.53
138072--138107	17	2.1	17	100	0	72	30	11	41	16	1.83
138893--138925	2	16.5	2	100	0	66	51	0	0	48	1.00
142664--142784	27	4.8	26	72	19	96	41	0	0	57	1.04
142681--142790	33	3.3	33	70	22	88	41	0	0	58	0.98
142678--142738	18	3.4	18	76	15	65	44	0	0	55	0.99
142730--142769	16	2.5	17	88	11	59	35	0	0	65	0.93
143075--143105	14	2.2	14	94	0	53	90	0	9	0	0.46
146485--146515	2	15.5	2	93	0	53	51	45	0	3	1.17
147367--147392	2	13.0	2	100	0	52	50	0	0	50	1.00
147756--147817	16	3.8	16	75	12	54	40	3	4	51	1.39
147776--147832	16	3.6	16	82	0	60	40	3	1	54	1.28
149836--149873	18	2.1	18	85	9	51	18	5	0	76	0.97
150055--150091	17	2.2	17	90	9	58	27	10	2	59	1.44
150896--150949	20	2.7	20	94	0	90	37	20	12	29	1.90
150999--151043	19	2.3	19	84	3	54	44	11	11	33	1.75
154224--154298	21	3.6	21	83	3	98	36	13	14	36	1.85
154334--154401	19	3.9	18	76	23	83	35	11	16	36	1.85
154355--154379	13	1.9	13	100	0	50	36	16	16	32	1.90
154336--154398	32	2.0	32	96	0	117	34	12	17	34	1.88
154441--154466	13	2.0	13	100	0	52	30	15	15	38	1.88
154421--154487	34	2.0	33	91	2	107	25	16	13	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156927--156979	27	2.0	27	100	0	106	24	33	18	22	1.97
157223--157293	28	2.6	28	88	2	99	23	38	19	18	1.93
157247--157481	79	3.0	79	75	5	233	25	27	15	31	1.95
156853--157423	289	2.0	284	87	3	831	26	27	14	32	1.94
164061--164111	20	2.5	20	87	6	68	37	17	11	33	1.86
164143--164209	20	3.4	20	89	2	100	29	19	16	34	1.94
164143--164218	20	3.8	20	86	8	93	32	18	15	32	1.93
165222--165417	79	2.5	79	84	1	232	30	15	27	27	1.96
165431--165613	52	3.5	52	83	3	235	33	9	25	31	1.88
165523--165651	51	2.5	51	82	2	143	34	13	24	27	1.92
165321--165810	262	1.9	262	94	0	872	31	12	26	28	1.93
165694--165815	52	2.4	51	81	9	131	31	10	25	31	1.90
168153--168178	13	2.0	13	100	0	52	38	15	15	30	1.88
168165--168206	21	2.0	21	100	0	84	28	19	9	42	1.82
168231--168280	19	2.6	19	93	6	84	36	18	14	32	1.90
171283--171653	166	2.2	163	80	6	415	30	9	9	49	1.68
171338--171698	166	2.2	162	80	7	386	30	10	10	48	1.71
173834--174113	148	1.9	149	80	3	323	26	18	17	36	1.94
177805--177843	15	2.5	15	87	4	51	82	2	7	7	0.94
179204--179265	17	3.4	17	67	16	52	27	8	4	59	1.46
179199--179274	38	2.0	38	100	0	152	28	7	5	57	1.49
179762--179790	5	6.0	5	92	8	51	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179762--179790	14	2.0	15	93	6	51	20	0	0	79	0.74
180090--180141	10	4.8	11	88	11	65	75	0	25	0	0.81
180092--180147	22	2.5	22	88	2	76	75	0	23	1	0.90
180090--180150	10	6.1	10	83	9	54	75	0	22	1	0.89
187828--187895	19	3.9	19	78	21	85	35	11	14	38	1.83
187849--187873	13	1.9	13	100	0	50	36	16	16	32	1.90
187830--187892	32	2.0	32	96	0	117	34	12	15	36	1.86
187935--187960	13	2.0	13	100	0	52	30	15	15	38	1.88
187915--187981	33	2.0	33	88	0	98	25	16	16	41	1.88
190458--190627	52	3.3	53	76	11	163	28	24	13	32	1.93

Tables:   1   2