genome.fa.s208.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold208
Parameters: 2 7 7 80 10 50 1000
Length:  228481

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190315--190655	184	1.8	185	86	3	499	29	25	12	32	1.93
190641--190844	80	2.6	80	81	3	225	24	29	16	29	1.96
192467--193073	28	21.6	27	81	9	612	23	17	29	29	1.97
192467--193075	84	7.2	84	82	6	705	23	17	29	29	1.97
192467--193075	114	5.4	114	84	5	697	23	17	29	29	1.97
193090--193167	13	5.9	13	73	13	52	33	14	11	41	1.81
194363--194406	20	2.3	19	84	4	52	4	6	4	84	0.88
195843--196243	62	6.5	62	88	0	541	23	24	19	31	1.98
195843--196260	186	2.2	184	91	3	651	23	25	19	32	1.97
196419--197358	84	11.3	81	71	17	486	20	26	13	39	1.89
196419--196605	44	4.4	44	83	6	251	17	26	14	41	1.87
196625--196933	161	1.9	162	85	5	428	20	27	12	39	1.89
196450--197234	44	18.6	42	75	12	486	19	27	12	39	1.89
197169--197311	77	1.9	76	86	1	205	20	23	12	42	1.87
197288--197375	40	2.2	38	77	16	90	19	29	11	39	1.86
197898--197949	20	2.6	20	84	0	77	30	13	7	48	1.71
199630--199724	32	2.9	32	96	1	172	35	14	16	32	1.90
199625--199722	19	5.8	18	67	28	72	33	14	17	34	1.90
199765--199789	13	1.9	13	100	0	50	32	16	16	36	1.90
199798--199926	52	2.5	52	96	0	240	35	17	17	29	1.93
207040--207091	14	3.4	16	80	19	67	84	9	5	0	0.77
207057--207095	9	4.3	9	87	9	53	89	5	5	0	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207040--207095	15	3.7	15	78	7	60	85	8	5	0	0.73
207041--207096	25	2.3	25	90	3	87	85	7	7	0	0.73
208133--208193	27	2.3	27	94	0	104	18	36	14	31	1.91
208161--208264	33	3.0	35	78	5	131	18	33	12	35	1.88
208161--208245	35	2.5	34	84	3	109	21	34	11	32	1.89
208260--208377	33	3.6	33	86	3	168	29	33	16	20	1.94
208262--208385	65	1.9	65	91	0	203	29	33	17	19	1.95
208391--209088	49	14.8	49	81	10	765	24	24	17	33	1.96
208391--209153	92	8.1	92	84	8	681	24	24	17	33	1.96
208999--209152	52	2.9	53	78	4	175	24	24	15	35	1.94
209399--209554	55	2.9	55	80	4	185	26	23	14	35	1.93
209113--209522	225	1.8	225	82	6	524	24	25	13	36	1.93
209341--209694	175	2.0	172	82	6	421	25	24	13	35	1.93
208996--209841	400	2.1	400	95	0	1503	23	25	14	36	1.93
212012--212053	22	2.0	21	85	4	57	42	9	4	42	1.58
212726--212959	79	3.0	79	83	0	290	27	22	15	34	1.94
212893--213061	51	3.3	51	88	0	248	29	25	13	31	1.94
212814--213140	181	1.8	181	83	2	442	29	24	14	31	1.95
212996--213384	79	4.9	79	80	3	390	28	25	13	31	1.94
212995--213384	157	2.5	157	80	1	431	28	25	13	31	1.94
219550--221410	62	30.1	61	84	3	2035	24	25	19	30	1.98
219550--221437	124	15.3	124	84	3	2245	24	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221434--221590	46	3.7	45	75	17	124	20	24	14	40	1.90
221427--221827	42	9.9	40	69	19	203	19	25	14	40	1.89
221563--221827	77	3.4	78	85	8	287	19	24	15	40	1.90
221628--221744	35	3.1	35	69	23	112	22	24	17	35	1.95
221602--221756	35	4.3	35	70	24	99	19	25	14	40	1.90
221637--221827	41	4.8	40	71	22	161	20	25	14	39	1.90
222452--222481	13	2.3	13	94	0	51	33	16	10	40	1.82
222415--222470	20	2.8	20	83	0	76	30	14	10	44	1.79
224830--224942	51	2.2	51	90	0	172	29	26	11	32	1.91
224878--225370	79	6.3	79	84	4	572	27	26	13	31	1.94

Tables:   1   2

The End!