genome.fa.s2084.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2084
Parameters: 2 7 7 80 10 50 1000
Length:  139054

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4105--4142	20	1.9	20	94	0	67	42	10	15	31	1.81
4181--4233	18	2.8	19	86	13	74	35	16	11	35	1.85
4977--5176	48	4.2	48	85	3	237	37	17	25	20	1.93
4977--5180	96	2.2	93	85	2	264	37	17	25	20	1.93
5294--5800	28	17.5	28	78	9	455	22	16	31	30	1.96
5282--5800	144	3.6	145	79	7	536	21	16	31	30	1.96
5294--5831	88	6.1	87	81	7	565	22	16	31	30	1.96
7063--7142	19	4.3	18	73	16	65	0	5	16	78	0.91
7053--7125	11	6.3	11	72	17	58	1	2	15	80	0.89
7073--7139	20	3.5	20	78	17	70	0	5	16	77	0.95
7066--7140	29	2.7	27	82	10	80	0	5	17	77	0.95
7088--7138	10	5.2	10	75	13	52	0	7	17	74	1.05
7108--7148	18	2.2	18	86	4	55	4	9	17	68	1.35
17252--17352	43	2.3	43	100	0	202	21	18	32	26	1.97
21070--21145	20	3.8	20	76	0	89	38	14	14	32	1.87
21128--21227	51	2.0	51	93	0	173	44	8	19	29	1.79
26721--26746	13	2.0	13	100	0	52	38	15	15	30	1.88
28961--29005	21	2.1	21	84	8	56	53	4	20	22	1.63
30809--30839	15	2.1	15	93	0	53	48	16	22	12	1.80
32919--32944	13	2.0	13	100	0	52	30	15	15	38	1.88
33065--33110	21	2.2	20	81	11	58	32	19	4	43	1.71
35489--35514	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37815--38437	30	20.7	30	66	12	249	21	23	12	42	1.87
37748--38802	60	17.4	60	84	5	1076	21	23	12	42	1.87
38568--38717	30	4.9	31	69	10	121	23	25	11	40	1.88
39855--40604	166	4.5	165	82	7	837	29	11	8	51	1.67
39882--40604	330	2.2	330	83	5	897	28	10	8	51	1.67
41794--42411	161	3.8	162	86	3	845	31	11	14	41	1.82
41794--42384	319	1.9	320	86	3	859	30	12	15	42	1.83
51388--51439	20	2.8	18	86	11	70	34	13	15	36	1.87
51424--51478	28	2.0	28	82	7	67	25	12	12	49	1.76
52346--52385	20	2.0	20	85	9	55	22	17	10	50	1.76
54007--54070	20	3.1	20	76	8	56	4	21	3	70	1.20
54627--55741	559	2.0	558	94	0	1982	40	15	16	27	1.89
55745--56430	42	16.3	42	76	7	525	41	17	24	16	1.89
55848--56386	172	3.2	172	78	10	533	41	17	24	16	1.89
55817--56403	214	2.8	214	76	8	520	41	17	24	16	1.89
55736--56428	210	3.3	211	76	9	585	41	17	24	16	1.89
56489--56682	101	1.9	100	87	1	280	43	11	21	23	1.84
56646--57780	44	25.5	44	69	12	228	40	14	22	21	1.90
57061--57705	132	4.9	130	77	9	576	40	15	23	20	1.91
57052--57697	88	7.3	88	80	7	545	40	15	23	21	1.91
57054--57782	88	8.3	86	78	9	491	40	15	22	21	1.91
57054--57904	132	6.4	130	75	10	541	40	15	23	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57960--58063	46	2.3	46	96	0	190	37	18	22	22	1.94
57960--58126	46	3.6	46	85	5	185	40	18	19	21	1.92
58102--58174	37	2.0	37	91	0	119	39	17	21	20	1.92
58144--58369	46	4.9	46	79	8	217	36	16	23	23	1.94
58143--58372	93	2.5	91	78	6	248	36	16	23	23	1.94
58563--58760	88	2.2	87	77	7	200	31	14	27	26	1.95
62303--62536	128	1.8	127	87	0	351	40	13	12	33	1.82
63656--64185	166	3.2	164	84	6	651	50	10	12	26	1.72
63730--64185	167	2.7	166	88	3	650	50	9	12	27	1.70
64073--64115	19	2.3	19	83	0	50	53	0	13	32	1.41
65553--65657	42	2.5	42	84	3	122	37	15	28	19	1.92
65595--65720	42	3.0	42	82	3	119	34	15	28	21	1.94
65744--65906	85	1.9	85	86	5	231	31	15	29	22	1.95
65737--65919	42	4.3	42	73	3	134	32	15	28	22	1.95
65767--66027	85	3.1	83	79	7	249	33	16	29	19	1.95
65795--66153	42	8.5	42	68	8	136	34	18	28	18	1.94
67371--68481	157	7.1	156	81	3	1108	37	21	16	23	1.93
67371--68481	467	2.4	467	80	4	1283	37	21	16	23	1.93
70323--70486	51	3.2	51	82	5	199	32	11	25	29	1.91
70524--70615	47	1.9	48	88	4	141	31	10	27	30	1.91
70631--70784	79	1.9	79	83	5	195	38	14	19	27	1.90
73181--73236	20	2.8	20	91	0	94	46	8	17	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73797--74542	61	12.1	61	83	3	848	30	18	25	25	1.98
73797--74542	183	4.0	183	84	4	942	30	18	25	25	1.98
74125--74510	132	3.0	131	79	7	457	32	17	24	25	1.97
75489--75527	16	2.6	15	88	8	53	2	17	0	79	0.84
75524--75553	13	2.3	13	94	0	51	10	0	3	86	0.67
75517--75552	19	1.9	18	94	5	63	11	0	2	86	0.68
82280--82344	30	2.2	30	88	2	96	29	30	6	33	1.82
82178--82388	80	2.6	82	85	6	254	33	24	7	34	1.84
82310--82438	51	2.5	51	80	2	132	30	23	8	37	1.84
82378--82788	81	5.1	81	79	3	345	28	27	10	32	1.90
82179--82602	214	2.0	211	80	6	480	31	25	8	33	1.87
82738--82790	28	2.0	26	85	10	72	26	32	15	26	1.95
88196--88262	20	3.7	20	68	25	67	35	7	17	38	1.78
88196--88275	33	2.4	33	97	0	151	35	8	17	38	1.81
88248--88277	13	2.3	13	94	0	51	33	10	16	40	1.82
90489--90530	21	2.1	19	86	8	57	52	7	14	26	1.67
94388--94413	13	2.0	13	100	0	52	38	15	15	30	1.88
96290--96332	22	2.0	22	95	0	77	41	4	32	20	1.73
96927--96980	19	2.8	19	85	2	72	27	14	18	38	1.90
98837--98938	31	3.3	31	79	6	107	22	30	11	35	1.90
98947--99717	66	11.8	66	83	2	828	25	23	17	33	1.96
98947--99904	132	7.3	132	80	7	943	24	24	16	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99735--99901	65	2.6	65	87	2	230	23	23	16	36	1.94
100374--100417	20	2.2	20	87	4	61	38	11	18	31	1.86
102956--103306	80	4.4	80	83	5	424	31	25	11	31	1.91
102955--103306	159	2.2	159	85	4	460	30	25	11	31	1.91
103165--103709	133	4.1	133	69	10	396	31	24	11	33	1.90
103288--103418	49	2.6	51	82	4	149	26	25	12	35	1.91
103351--103575	81	2.8	80	81	4	233	30	26	10	32	1.90
103726--103844	52	2.3	51	89	4	177	27	31	8	31	1.87
103299--103877	215	2.7	210	78	5	626	30	26	10	32	1.90
103684--103921	131	1.8	128	89	4	370	28	31	8	31	1.87
103778--103930	79	2.0	79	87	5	222	28	32	7	32	1.85
107304--107634	160	2.1	156	82	5	380	27	13	19	39	1.89
113994--114033	19	2.2	19	90	4	64	25	0	7	67	1.16
113994--114041	9	5.2	9	80	9	53	29	0	8	62	1.24
114261--114473	118	1.8	118	100	0	426	34	13	17	33	1.89
122052--122101	18	2.8	18	81	6	57	44	2	46	8	1.44
121986--122095	42	2.6	42	94	0	193	40	2	46	10	1.52
125561--125712	76	2.0	76	100	0	304	22	18	27	31	1.97
134730--134794	12	5.9	12	68	26	54	43	0	44	12	1.41
134733--134823	42	2.2	42	91	0	146	42	1	43	12	1.49
137659--137734	12	6.9	11	75	15	52	39	2	48	9	1.49
137658--137743	24	3.8	24	72	17	85	41	2	45	10	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137649--137767	42	2.8	42	92	0	193	42	2	46	8	1.47

Tables:   1

The End!