genome.fa.s2101.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2101
Parameters: 2 7 7 80 10 50 1000
Length:  301709

Tables:   1   2   

This is table  2  of  2  ( 182 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213110--213156	23	2.1	23	88	4	69	48	4	19	27	1.67
213771--213865	31	3.0	31	80	9	111	61	2	0	36	1.08
213774--213875	26	3.6	28	69	20	63	60	0	0	37	1.10
216241--216271	16	1.9	16	93	0	53	80	0	0	19	0.71
218167--218224	21	2.7	22	86	7	75	41	0	0	58	0.98
218410--218459	6	8.5	6	77	4	57	16	2	4	78	1.00
218410--218459	17	2.9	17	87	3	64	16	2	4	78	1.00
218410--218467	23	2.5	23	86	5	73	18	1	3	75	1.03
219258--219288	3	10.3	3	100	0	62	67	0	0	32	0.91
220251--220283	17	1.9	17	93	0	57	36	3	9	51	1.49
221153--221189	16	2.2	17	86	13	51	51	0	0	48	1.00
221172--221222	22	2.3	23	80	10	61	50	0	3	45	1.20
222033--222092	31	1.9	32	83	10	79	50	11	8	30	1.68
222087--222139	16	3.4	16	89	7	67	62	7	1	28	1.33
226879--226922	3	15.3	3	90	9	65	27	0	2	70	0.99
227371--227411	2	20.5	2	89	0	64	0	53	0	46	1.00
227482--227506	13	1.9	13	100	0	50	36	0	8	56	1.29
235014--235054	11	3.7	11	87	9	57	34	0	0	65	0.93
235013--235053	16	2.5	17	92	4	66	34	0	0	65	0.93
235013--235054	6	7.5	6	79	15	54	33	0	0	66	0.92
239179--239222	20	2.2	20	91	0	70	36	15	13	34	1.87
239248--239286	20	2.0	20	100	0	78	30	15	10	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240502--240528	13	2.1	13	100	0	54	29	14	14	40	1.86
240513--240587	19	3.9	19	91	1	123	29	14	14	41	1.86
240632--240661	13	2.3	13	94	0	51	36	16	10	36	1.82
245518--245758	121	2.0	121	94	0	419	32	15	2	49	1.58
245782--245845	32	2.0	32	93	0	110	29	29	0	40	1.57
250421--250480	24	2.5	24	83	0	75	45	10	20	25	1.81
250968--250998	16	1.9	16	93	0	53	54	0	9	35	1.33
253524--253573	19	2.5	20	80	3	57	38	18	12	32	1.87
254492--254564	33	2.2	33	92	0	119	35	19	23	21	1.96
260601--260631	3	10.3	3	92	0	53	29	35	0	35	1.58
262209--262268	13	5.2	12	75	20	65	33	18	13	35	1.89
262298--262352	20	2.8	20	91	5	85	32	20	18	29	1.96
262257--262418	83	2.0	83	93	0	279	29	17	22	30	1.97
262402--262428	13	2.1	13	100	0	54	40	7	14	37	1.74
277789--277835	21	2.3	20	82	13	60	44	17	14	23	1.85
278672--278820	52	2.9	51	88	4	226	30	16	18	33	1.94
278809--278833	13	1.9	13	100	0	50	36	16	16	32	1.90
278874--278940	33	2.0	33	88	0	98	40	14	11	32	1.83
278896--278920	13	1.9	13	100	0	50	32	16	16	36	1.90
279749--280309	49	11.6	52	74	14	302	32	16	25	24	1.96
279856--280270	43	9.1	43	76	12	389	31	17	25	25	1.97
279803--280270	92	5.0	92	90	1	720	32	17	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280315--280408	32	3.0	31	84	9	120	18	17	35	29	1.93
280486--280747	87	3.0	88	83	5	309	25	16	26	30	1.97
280490--280749	30	9.0	28	75	7	209	24	16	27	30	1.97
280473--280749	57	4.8	57	83	6	299	24	16	27	31	1.96
282182--282292	1	111.0	1	72	0	87	0	0	13	86	0.57
282182--282292	14	8.2	14	81	16	121	0	0	13	86	0.57
282184--282294	20	5.4	21	81	13	115	0	0	14	85	0.59
282182--282292	35	3.2	34	83	12	145	0	0	13	86	0.57
282183--282294	36	3.3	34	80	14	124	0	0	14	85	0.59
291986--292012	10	2.7	10	100	0	54	77	22	0	0	0.76
295268--295314	21	2.3	20	82	13	60	44	17	14	23	1.85
296163--296279	52	2.2	52	89	3	173	30	17	18	33	1.94
296268--296292	13	1.9	13	100	0	50	36	16	16	32	1.90
296333--296399	33	2.0	33	88	0	98	40	14	11	32	1.83
296355--296379	13	1.9	13	100	0	50	32	16	16	36	1.90
299479--299576	20	4.9	20	88	5	144	39	11	16	32	1.84
300684--301392	28	25.1	28	79	9	728	28	31	16	22	1.96
300684--301396	57	12.6	56	80	10	492	28	32	16	22	1.96

Tables:   1   2

The End!