genome.fa.s2116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2116
Parameters: 2 7 7 80 10 50 1000
Length:  36227

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1858--1893	19	1.9	18	88	5	54	52	11	8	27	1.65
2633--3343	49	14.9	49	86	5	1001	30	18	26	24	1.97
2633--3343	92	7.4	97	93	4	1078	30	18	26	24	1.97
3200--3343	50	2.9	50	92	1	236	30	17	26	25	1.97
3343--3432	34	2.7	33	94	3	162	18	18	33	28	1.95
3398--3656	29	8.5	29	74	12	139	27	15	30	26	1.96
3440--3528	34	2.7	33	80	5	99	37	12	29	21	1.90
3568--3620	27	2.0	27	88	0	79	16	16	32	33	1.92
3505--3748	31	8.2	30	80	6	149	27	16	29	26	1.97
5033--5117	17	5.3	17	74	14	74	3	0	10	85	0.70
5036--5116	18	4.3	18	83	10	92	3	0	11	85	0.73
5033--5119	29	3.0	29	83	6	104	3	0	11	85	0.72
5033--5117	1	85.0	1	71	0	62	3	0	10	85	0.70
12063--12087	13	1.9	13	100	0	50	36	16	16	32	1.90
12130--12182	20	2.7	19	85	5	70	41	15	11	32	1.82
13583--13618	18	2.0	18	88	0	54	83	2	13	0	0.76
13584--13621	16	2.4	16	83	12	51	86	2	10	0	0.66
15019--15218	92	2.2	89	84	5	242	27	22	15	35	1.94
15925--16048	47	2.7	45	79	7	122	21	18	17	41	1.90
16109--16226	45	2.6	46	78	2	130	23	16	18	41	1.89
17423--17462	18	2.3	17	87	12	55	17	12	5	65	1.44
17239--17548	158	2.0	156	87	3	446	28	11	9	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17206--17730	163	3.3	158	78	11	480	30	11	8	49	1.68
17472--17768	163	1.8	163	80	7	361	29	9	10	50	1.68
17913--17941	15	2.0	15	93	6	51	24	0	0	75	0.80
18296--18326	13	2.4	13	94	0	53	19	19	16	45	1.86
19166--19551	140	2.8	134	81	7	438	34	12	11	42	1.78
23211--23255	20	2.2	20	84	7	56	40	15	11	33	1.83
27594--27634	21	2.0	20	90	4	64	51	17	12	19	1.76
29336--29933	52	11.5	52	76	9	454	35	14	24	24	1.94
29397--29956	104	5.4	104	85	2	671	35	15	25	24	1.94
29270--29945	156	4.3	157	77	8	602	36	14	24	24	1.93
29965--30114	32	4.7	30	82	8	165	18	20	31	29	1.97
29956--30119	63	2.6	65	86	4	226	21	18	32	27	1.97
30266--30336	26	2.7	27	82	4	99	35	11	26	26	1.90
30306--30664	32	10.8	33	74	10	254	36	10	30	21	1.88
30311--30631	68	4.8	67	78	10	266	35	10	31	22	1.88
30377--30641	68	3.9	68	79	9	269	35	10	31	21	1.88
30672--30793	33	3.8	33	86	4	160	31	12	32	22	1.91
30641--30848	30	6.8	30	81	4	159	30	13	32	23	1.93
30641--30848	63	3.4	60	75	10	152	30	13	32	23	1.93
32435--32507	20	3.7	19	87	7	85	28	15	17	38	1.90
32552--32604	13	4.5	13	69	26	55	33	13	15	37	1.86
32536--32604	33	2.1	33	89	5	104	31	13	17	37	1.88

Tables:   1

The End!