genome.fa.s2137.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2137
Parameters: 2 7 7 80 10 50 1000
Length:  91570

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3596--3621	13	2.0	13	100	0	52	30	15	15	38	1.88
3576--3639	33	2.0	32	90	3	101	26	14	20	39	1.90
3721--3745	13	1.9	13	100	0	50	36	16	16	32	1.90
4443--4484	19	2.2	20	86	4	59	42	11	11	33	1.78
4699--4729	16	1.9	16	93	0	53	67	16	0	16	1.23
6818--6868	20	2.5	20	83	0	57	39	13	9	37	1.78
6834--6911	20	3.9	20	80	6	95	34	14	11	39	1.82
10370--10516	78	1.9	79	81	11	185	35	14	22	27	1.94
10364--10741	79	4.8	78	77	5	341	33	14	25	26	1.94
10364--10743	158	2.4	157	77	5	381	33	14	25	26	1.95
10682--10803	50	2.4	49	87	4	163	40	13	20	25	1.88
13085--13179	20	4.8	20	88	3	129	43	14	13	28	1.84
24474--24523	19	2.6	19	96	0	91	32	12	18	38	1.87
24441--24504	32	2.0	33	87	3	94	37	14	15	32	1.87
24566--24590	13	1.9	13	100	0	50	32	16	16	36	1.90
24581--24727	52	2.8	50	87	6	204	34	18	16	30	1.93
30975--31012	5	7.6	5	82	11	51	84	15	0	0	0.63
30977--31014	16	2.4	16	95	4	69	84	15	0	0	0.63
32285--32781	31	16.1	30	74	11	391	23	28	16	30	1.96
32285--32779	92	5.3	92	87	6	594	24	28	16	30	1.96
32285--32781	61	8.0	62	75	10	412	23	28	16	30	1.96
32757--32804	23	2.1	23	88	7	71	31	33	16	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32727--32836	57	2.0	54	84	8	141	26	30	16	26	1.97
32798--33074	31	8.3	34	77	12	220	19	32	14	32	1.92
32878--33074	97	2.0	94	80	10	211	19	32	15	32	1.93
33078--33507	33	13.2	33	88	6	637	28	34	17	19	1.95
33076--33514	65	6.8	66	93	3	725	28	34	17	19	1.95
33507--33777	43	5.7	49	77	11	289	26	24	17	31	1.97
33512--33786	92	3.0	92	92	2	435	25	24	17	32	1.97
33790--33916	67	1.9	68	86	1	184	24	24	12	38	1.90
34657--34713	13	3.9	13	76	24	60	35	14	17	33	1.90
34640--34732	32	2.9	32	98	1	177	35	12	18	33	1.89
34640--34751	19	6.5	19	75	23	122	34	12	17	34	1.88
34794--34818	13	1.9	13	100	0	50	32	16	16	36	1.90
34827--34955	52	2.5	52	96	0	231	36	18	17	27	1.94
36354--36392	21	1.9	20	85	15	53	53	2	2	41	1.28
38624--38665	15	2.7	15	96	3	75	11	26	33	28	1.92
40906--40979	36	2.1	36	89	0	112	22	18	13	44	1.85
41423--41772	175	2.0	175	84	2	452	33	17	14	34	1.90
41611--42572	476	2.0	473	87	3	1369	31	18	14	35	1.91
42844--42900	13	3.9	13	76	24	60	36	14	15	33	1.88
42824--42921	32	3.0	32	92	1	160	36	12	15	35	1.85
42826--42919	19	5.6	18	68	28	64	37	12	14	35	1.85
46124--49126	475	6.3	475	86	2	3866	31	17	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46525--47161	159	4.0	156	65	17	376	31	15	14	39	1.87
46124--49126	951	3.2	946	85	3	4046	31	17	14	36	1.90
48975--49292	166	1.9	166	92	0	528	28	17	13	40	1.87
49141--50875	475	3.7	474	89	1	2452	31	17	14	36	1.90
48499--49749	641	2.0	642	92	1	2091	30	17	14	37	1.90
50923--62508	476	24.5	476	84	3	13984	31	18	14	36	1.90
53781--53821	22	1.9	22	95	5	75	26	19	19	34	1.96
55865--61908	159	38.3	154	66	13	1265	31	18	14	36	1.91
55760--62508	951	7.1	951	87	2	8687	31	18	14	36	1.91
62800--62852	20	2.7	20	100	0	106	30	15	20	33	1.93
62903--62954	19	2.7	20	87	6	79	42	15	13	28	1.85
68677--68722	21	2.2	20	81	11	58	32	19	4	43	1.71
71099--71162	32	2.0	33	87	3	94	43	15	12	28	1.83
72097--74171	159	13.1	156	67	13	641	31	18	14	36	1.90
71916--74283	476	5.0	475	87	2	3343	31	17	14	36	1.90
71916--74276	951	2.5	950	90	2	3695	31	18	14	36	1.90
82178--82669	30	16.0	30	78	5	401	23	28	15	33	1.94
82178--82669	61	8.0	61	77	5	436	23	28	15	33	1.94
82188--82669	91	5.2	91	81	4	504	23	28	15	32	1.95
82650--83666	34	30.8	33	75	11	827	20	30	11	37	1.89
82650--83666	67	15.4	66	75	11	809	20	30	11	37	1.89
83051--83107	27	2.1	27	86	0	78	21	29	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83248--83308	27	2.2	28	91	2	97	21	32	11	34	1.89
83444--83497	27	2.0	27	92	3	92	22	38	12	25	1.90
83663--84280	49	12.7	49	76	7	497	26	25	16	31	1.96
83682--84182	101	5.2	98	79	8	477	26	25	16	31	1.96
83663--84054	150	2.6	150	90	0	604	26	25	16	31	1.96
83974--84142	88	1.9	88	92	0	284	28	24	15	31	1.96
83933--84179	137	1.8	137	85	0	350	27	24	15	32	1.95
85092--85146	20	2.8	20	88	5	76	32	14	12	40	1.84
87948--91527	935	3.8	935	90	3	5293	30	18	14	35	1.92
87935--91557	473	7.7	475	82	7	4219	30	18	14	35	1.92

Tables:   1

The End!