genome.fa.s2148.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2148
Parameters: 2 7 7 80 10 50 1000
Length:  91359

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2101--2372	129	2.1	130	95	0	492	22	19	10	47	1.80
3312--3964	324	2.0	324	84	2	864	36	14	17	31	1.90
2836--4439	799	2.0	800	86	2	2245	36	13	18	30	1.90
3636--4617	475	2.1	475	84	3	1244	35	13	18	31	1.90
4506--4735	126	1.8	126	90	0	370	33	12	17	35	1.88
4097--5222	601	1.9	594	87	1	1452	36	14	18	31	1.90
4632--6566	474	4.1	473	83	2	2362	35	14	19	31	1.91
4632--6566	950	2.0	950	87	2	2783	35	14	19	31	1.91
6187--6989	429	1.9	429	87	2	1193	36	14	18	30	1.91
6564--7530	159	6.1	157	66	14	395	36	14	17	30	1.90
7041--7693	324	2.0	324	85	2	875	36	14	17	31	1.90
6566--8167	798	2.0	799	86	1	2221	36	14	18	30	1.90
7365--8996	476	3.4	473	84	2	1974	35	14	18	31	1.91
8954--9016	29	2.2	28	83	5	90	47	9	22	20	1.78
14999--15677	346	2.0	344	86	4	956	36	14	17	31	1.90
15342--17143	462	3.8	473	84	4	2414	35	13	18	32	1.90
17149--18322	476	2.5	472	84	4	1461	36	13	17	31	1.89
18617--18687	27	2.6	27	95	0	124	21	18	36	23	1.95
19961--20480	28	18.6	28	86	5	705	19	17	33	30	1.95
19961--20478	82	6.2	80	86	7	685	19	17	33	30	1.95
23735--23843	54	2.0	54	100	0	218	31	20	18	30	1.96
28991--29051	9	7.1	9	70	10	56	14	44	0	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28996--29072	12	5.9	12	73	26	68	14	46	0	38	1.44
28972--29081	42	2.6	42	91	0	175	12	43	0	43	1.42
30754--30794	15	2.7	15	88	0	64	24	24	31	19	1.98
41558--41596	20	2.1	19	85	9	53	56	10	10	23	1.63
42504--42558	20	2.8	20	85	0	74	38	16	12	32	1.86
49566--49636	33	2.2	33	84	0	88	12	42	2	42	1.57
49594--49675	42	2.0	42	87	0	119	12	41	0	46	1.41
50397--50434	17	2.1	19	90	9	62	5	15	5	73	1.19
51712--57859	476	12.9	474	84	4	7037	36	13	18	31	1.90
52591--55643	159	19.3	156	66	12	727	36	13	18	31	1.90
56727--57401	158	4.3	158	67	13	382	35	14	18	32	1.90
57750--57952	107	1.9	107	86	2	291	33	17	16	32	1.92
57755--57981	107	2.1	106	81	4	242	33	15	17	33	1.91
57266--58442	583	2.0	585	82	7	1433	35	13	19	31	1.90
57857--59393	476	3.2	473	83	3	1882	35	13	18	32	1.90
59290--59488	107	1.9	106	86	4	283	35	16	17	31	1.92
58809--59975	582	2.0	582	82	3	1443	35	13	17	32	1.90
67597--69566	936	2.1	936	87	3	2819	35	13	18	31	1.90
67597--69625	473	4.3	473	84	5	2593	35	13	18	31	1.90
69036--70824	605	3.0	597	78	7	1940	34	13	18	32	1.90
71356--71414	32	1.9	30	83	13	75	59	10	10	20	1.58
71674--71738	32	2.0	34	87	6	98	29	12	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71769--71842	20	3.7	20	82	8	78	29	17	13	39	1.88
73782--73824	20	2.1	20	82	4	50	9	27	44	18	1.80
74255--74292	13	2.9	13	92	0	58	34	15	15	34	1.90
74268--74348	33	2.5	33	97	0	153	43	12	14	29	1.82
74301--74325	13	1.9	13	100	0	50	32	16	16	36	1.90
76406--76436	15	2.1	15	93	0	53	12	22	16	48	1.80
78239--78283	21	2.1	21	84	8	56	22	20	4	53	1.63
80165--80223	32	1.9	30	83	13	75	57	10	10	22	1.61
80483--80547	32	2.0	34	87	6	98	29	12	13	44	1.81
80578--80651	20	3.7	20	82	8	78	29	17	13	39	1.88
80936--85491	476	9.5	474	76	9	3455	35	13	19	31	1.91
83363--83594	121	1.9	120	89	0	356	33	13	21	31	1.92
83483--85491	474	4.3	475	85	3	2451	35	13	19	31	1.91
83513--85491	941	2.1	941	83	4	2505	35	13	19	31	1.91
85374--85612	121	2.0	120	87	0	343	32	13	21	32	1.92
85494--87696	476	4.7	474	84	4	2491	34	14	18	32	1.91
87293--88108	418	2.0	417	83	4	1054	35	13	18	32	1.90
87711--89516	473	3.8	473	85	3	2314	35	13	18	31	1.91
87711--89460	475	3.7	475	85	2	2278	35	13	18	31	1.90

Tables:   1

The End!