genome.fa.s2169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2169
Parameters: 2 7 7 80 10 50 1000
Length:  170354

Tables:   1   2   

This is table  1  of  2  ( 169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3118--3170	27	1.9	28	84	3	72	52	1	0	45	1.11
4355--4411	28	1.9	29	82	10	71	47	3	7	42	1.47
4768--4798	2	15.5	2	93	0	53	48	0	0	51	1.00
6044--6072	2	14.5	2	100	0	58	48	0	0	51	1.00
6388--6424	2	18.5	2	100	0	74	51	0	0	48	1.00
6965--7006	21	2.0	21	90	0	66	57	0	0	42	0.99
7114--7180	20	3.4	20	75	13	68	41	0	0	58	0.98
7141--7166	8	3.2	8	100	0	52	38	0	0	61	0.96
7156--7188	11	3.0	11	91	8	50	36	0	3	60	1.12
7461--7486	3	8.7	3	100	0	52	69	0	0	30	0.89
8247--8289	14	3.1	14	80	6	52	48	2	2	46	1.27
8611--8646	19	2.0	17	89	10	54	61	0	0	38	0.96
12358--12398	18	2.4	17	84	11	57	70	0	0	29	0.87
12509--12548	19	2.2	19	86	13	57	62	0	0	37	0.95
12931--12982	20	2.7	20	90	3	79	38	0	0	61	0.96
13423--13476	7	7.9	7	73	19	51	31	0	0	68	0.90
14233--14273	18	2.3	18	95	0	73	39	19	14	26	1.90
14660--14704	23	2.0	23	86	8	65	33	2	0	64	1.06
15397--15439	22	2.0	22	95	0	77	32	11	13	41	1.81
21326--21372	19	2.4	20	82	13	62	44	0	0	55	0.99
21333--21376	19	2.4	19	85	14	65	40	0	0	59	0.98
23111--23157	13	3.0	16	76	23	55	36	6	0	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25982--26092	45	2.5	45	90	0	168	18	18	38	24	1.93
26076--26129	21	2.6	21	81	0	72	14	25	42	16	1.87
25914--26748	66	12.7	65	69	15	398	17	20	39	22	1.92
26186--26248	21	3.0	21	73	17	76	15	19	36	28	1.92
26027--26717	87	7.9	86	71	14	377	16	20	39	22	1.92
26072--26324	108	2.3	108	80	2	285	16	22	39	21	1.92
25941--26440	195	2.5	195	88	5	745	17	20	40	22	1.92
26271--26324	21	2.6	21	87	0	81	16	25	42	14	1.87
26375--26521	45	3.3	45	68	16	128	15	20	40	23	1.90
26420--26585	21	7.8	21	68	15	99	16	21	40	21	1.91
25920--26477	195	2.8	193	82	11	668	16	20	39	22	1.92
26420--26651	108	2.1	108	85	4	299	17	21	40	21	1.92
26223--26557	153	2.2	153	97	0	625	16	20	40	22	1.91
26465--26665	108	1.9	108	90	4	325	16	20	39	23	1.92
26679--26722	21	2.1	21	86	0	61	15	20	36	27	1.93
32551--32575	2	12.5	2	100	0	50	48	0	0	52	1.00
32577--32685	37	3.0	37	72	13	118	57	1	1	38	1.20
32653--32756	32	3.3	32	78	4	131	53	0	3	41	1.25
32736--32795	21	2.8	20	71	28	52	55	1	0	43	1.10
33001--33027	5	5.4	5	100	0	54	18	0	0	81	0.69
33001--33034	15	2.2	15	89	5	50	23	0	0	76	0.79
35472--35502	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35830--35891	20	3.2	20	76	15	67	54	1	0	43	1.09
35830--35891	19	3.2	19	80	11	63	54	1	0	43	1.09
36066--36102	13	2.8	13	91	4	56	64	8	0	27	1.21
41162--41215	27	2.0	27	89	7	83	25	25	20	27	1.99
42103--42160	24	2.4	24	85	8	73	36	0	0	63	0.94
42133--42179	15	2.7	19	78	15	57	29	0	0	70	0.88
42098--42178	25	3.3	24	79	10	92	34	0	0	65	0.93
42140--42179	19	2.0	20	86	13	57	30	0	0	70	0.88
42140--42202	26	2.5	25	86	2	81	31	0	1	66	1.01
42689--42764	26	3.0	25	74	9	66	36	1	0	61	1.04
43407--43456	24	2.0	26	88	7	77	40	0	0	60	0.97
43411--43491	34	2.4	34	82	10	96	33	1	1	64	1.10
43554--43618	19	3.5	19	77	10	62	38	3	3	55	1.31
45143--45209	33	2.0	33	86	11	93	34	1	0	64	1.03
45149--45246	33	2.8	32	81	17	92	35	2	0	62	1.07
46557--46669	58	1.9	58	83	5	147	38	7	5	47	1.55
46922--46995	31	2.4	30	77	8	78	50	0	0	50	1.00
47215--47247	2	16.5	2	100	0	66	48	0	0	51	1.00
47414--47457	22	2.0	22	86	8	63	54	0	0	45	0.99
47606--47641	16	2.2	16	90	9	56	33	2	0	63	1.08
53826--53865	3	13.3	3	100	0	80	67	0	0	32	0.91
54107--54164	21	2.8	21	75	17	59	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54110--54171	22	3.0	20	77	11	63	53	0	1	45	1.10
54887--54918	11	3.1	11	86	13	50	25	9	0	65	1.22
55597--55670	38	1.9	38	91	0	121	50	9	9	31	1.67
56794--57084	77	3.8	77	72	9	216	36	13	14	35	1.85
57966--58009	23	1.9	23	85	0	61	54	4	2	38	1.33
59321--59355	12	2.9	12	91	0	52	40	0	0	60	0.97
60009--60087	16	4.9	16	80	6	88	55	7	0	36	1.28
60006--60088	32	2.6	32	84	1	105	57	7	0	34	1.26
63017--63059	18	2.4	18	80	3	52	0	23	9	67	1.19
66060--66103	2	22.0	2	100	0	88	0	50	0	50	1.00
68276--68323	19	2.6	19	78	15	55	50	0	0	50	1.00
68896--68926	16	1.9	16	93	0	53	41	3	6	48	1.45
72074--72098	13	1.9	13	100	0	50	32	0	0	68	0.90
72194--72236	22	2.0	22	90	4	70	37	2	0	60	1.10
72202--72243	22	1.9	22	90	0	66	38	2	0	59	1.10
73533--73595	29	2.4	25	76	21	65	65	0	3	31	1.09
75353--75398	2	23.0	2	100	0	92	50	0	0	50	1.00
75597--75665	12	6.1	12	75	13	65	40	4	10	44	1.58
76379--76419	20	2.0	21	90	4	66	53	0	2	43	1.13
77970--78010	18	2.2	18	86	8	55	65	0	2	31	1.05
78016--78055	2	21.0	2	87	10	57	47	2	0	50	1.14
78580--78618	19	2.1	19	90	9	62	23	5	5	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82955--82991	8	4.3	9	86	6	51	24	0	0	75	0.80
83351--83385	4	8.8	4	100	0	70	22	0	0	77	0.78
84196--84256	30	2.0	30	96	0	113	32	29	18	19	1.95
85194--85242	2	24.5	2	87	0	71	44	0	6	48	1.27
90351--90385	2	17.5	2	100	0	70	48	0	0	51	1.00
91595--91635	2	21.0	2	85	14	59	48	0	2	48	1.14
91981--92005	12	2.1	12	100	0	50	0	24	0	76	0.80
94016--94060	16	2.7	18	83	13	60	62	0	0	37	0.96
94013--94062	24	2.1	24	88	7	75	62	0	0	38	0.96
94052--94097	14	2.9	16	84	12	51	43	0	0	56	0.99
94178--95549	245	5.5	251	82	6	1503	42	8	5	43	1.59
94696--94772	16	4.8	16	67	25	54	45	1	0	53	1.08
95603--95646	23	2.0	22	86	4	61	52	0	0	47	1.00
96924--96958	18	1.9	18	94	0	61	31	8	0	60	1.27
98067--98098	2	16.0	2	100	0	64	50	0	50	0	1.00
98361--98432	21	3.1	23	78	15	78	56	0	0	43	0.99
98361--98420	21	2.8	22	85	10	79	58	0	0	41	0.98
98411--98450	12	3.3	12	80	13	55	47	0	0	52	1.00
98400--98450	12	4.2	13	78	12	54	50	0	0	49	1.00
98531--98565	2	17.5	2	100	0	70	48	0	0	51	1.00
98883--98913	2	15.5	2	100	0	62	51	0	0	48	1.00
100276--100356	25	3.4	23	74	19	76	49	1	0	49	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102008--102053	17	2.8	16	78	15	58	78	2	0	19	0.86
102592--102629	20	1.9	20	89	10	60	36	0	0	63	0.95
103925--103950	2	13.0	2	100	0	52	50	0	0	50	1.00
104138--104187	23	2.2	23	81	0	55	58	0	0	42	0.98
106064--106107	16	2.9	16	83	9	58	50	0	0	50	1.00
106061--106111	7	7.1	7	78	12	59	49	0	0	50	1.00
106078--106126	16	3.1	16	82	8	55	40	0	0	59	0.98
106067--106118	23	2.3	23	83	3	70	46	0	0	53	1.00
106276--106401	8	15.5	8	71	16	82	38	0	0	61	0.96
106334--106425	14	5.8	17	70	21	74	35	0	0	64	0.94

Tables:   1   2