Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2169
Parameters: 2 7 7 80 10 50 1000
Length:  170354

Tables:   1   2   

This is table  2  of  2  ( 169 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106309--106397
32
2.7
34
84
10
121
40
0
0
59
0.97
106271--106427
18
8.3
19
66
21
64
36
0
0
63
0.95
106334--106427
18
5.8
17
70
20
69
36
0
0
63
0.94
107473--107514
20
2.1
20
86
0
57
40
7
4
47
1.52
107604--107640
19
2.0
18
89
5
56
51
13
0
35
1.41
108475--108512
14
2.6
15
83
8
51
44
2
0
52
1.14
109693--109781
27
3.3
26
69
18
74
57
0
1
41
1.06
110100--110148
23
2.1
24
92
3
82
69
12
2
16
1.28
110756--110811
8
7.2
8
82
8
71
0
17
0
82
0.68
110756--110811
15
3.7
15
83
4
76
0
17
0
82
0.68
110760--110811
23
2.2
24
90
6
81
0
19
0
80
0.71
111639--111681
18
2.4
18
80
3
52
60
13
0
25
1.34
111639--111691
17
3.1
17
75
5
52
64
11
0
24
1.26
112755--112780
2
13.0
2
100
0
52
50
0
0
50
1.00
116780--116815
2
18.5
2
94
5
65
50
0
0
50
1.00
117281--117315
3
11.7
3
87
0
52
62
0
5
31
1.18
118577--118666
44
2.0
44
100
0
180
18
11
23
46
1.81
124825--124859
10
3.4
10
88
4
52
17
0
8
74
1.06
126522--126561
12
3.1
13
85
10
55
52
0
0
47
1.00
126900--126951
26
2.0
26
88
0
77
36
11
26
25
1.90
127129--127176
15
3.1
15
82
5
60
62
6
0
31
1.20
127335--127403
21
3.3
20
69
20
61
43
1
10
44
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129501--129543
21
2.0
21
90
0
68
20
37
16
25
1.93
134414--134491
27
2.9
28
82
3
97
55
1
0
43
1.08
135051--135099
21
2.4
20
86
3
71
63
0
0
36
0.95
135440--135473
2
18.0
2
88
11
54
52
0
0
47
1.00
136243--136803
302
1.9
302
86
3
806
38
10
15
35
1.81
137028--137071
20
2.2
20
100
0
88
25
9
15
50
1.74
138550--138591
20
2.1
21
86
8
61
64
0
2
33
1.07
143335--143412
40
2.0
39
84
2
102
41
12
12
33
1.82
143338--143412
20
3.8
20
76
3
71
41
12
13
33
1.81
145825--145882
29
2.0
29
83
6
73
55
0
0
44
0.99
146919--147245
78
4.2
78
74
8
193
37
14
13
34
1.86
148012--148039
14
2.0
14
100
0
56
50
0
0
50
1.00
150014--150077
32
2.0
32
84
6
85
57
10
0
31
1.33
150026--150089
16
3.9
17
74
12
53
59
7
0
32
1.26
152998--153062
3
21.7
3
93
0
112
1
32
0
66
1.01
156053--156081
2
14.5
2
100
0
58
0
48
0
51
1.00
157466--157522
15
3.9
15
71
13
55
59
3
1
35
1.25
157711--157756
22
2.1
22
84
11
60
34
0
0
65
0.93
157932--158023
22
4.2
22
70
19
59
47
1
1
50
1.15
157955--158033
41
1.9
42
84
2
106
48
1
1
49
1.17
158340--158379
11
3.5
12
80
19
50
45
0
0
55
0.99
158905--158952
19
2.6
19
78
15
55
47
0
2
50
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
162296--162350
26
2.1
26
83
6
67
43
3
0
52
1.18
163393--163444
26
2.0
25
88
3
77
40
17
7
34
1.78
163555--163599
2
22.5
2
90
0
72
48
2
2
46
1.26
165602--165634
14
2.4
14
90
5
50
51
0
0
48
1.00
167756--167813
23
2.5
23
70
10
55
48
3
0
48
1.18

Tables:   1   2

The End!