genome.fa.s2170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2170
Parameters: 2 7 7 80 10 50 1000
Length:  45130

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2253--5589	475	7.1	473	83	4	3939	35	13	19	31	1.91
2261--5589	947	3.5	940	86	4	4253	35	13	19	31	1.91
6011--9165	476	6.6	475	86	2	3984	35	13	19	31	1.91
9384--11267	475	4.0	473	85	3	2442	37	13	18	30	1.90
11052--11545	158	3.1	157	70	11	425	35	16	18	30	1.93
10967--11581	314	2.0	315	86	3	864	35	16	17	29	1.93
10495--12042	791	2.0	776	84	4	2045	36	14	18	30	1.90
9540--11670	951	2.2	950	80	6	2171	36	14	18	30	1.91
13904--13980	12	5.9	12	71	25	59	41	1	45	11	1.49
13925--13985	9	7.1	9	70	10	56	42	1	44	11	1.50
13895--14013	42	2.8	42	84	2	150	44	1	43	10	1.47
13949--13994	12	3.9	12	83	13	60	45	0	41	13	1.43
20280--20398	42	2.8	42	90	0	184	8	47	2	42	1.47
20304--20382	21	3.5	24	68	19	71	11	46	2	39	1.53
20304--20389	24	3.8	24	72	17	76	10	46	2	40	1.51
23307--23425	42	2.8	42	92	0	193	8	46	2	42	1.47
23340--23415	12	6.9	11	75	15	52	9	48	2	39	1.49
23331--23416	24	3.8	24	72	17	85	10	45	2	41	1.51
23322--23392	18	3.6	18	69	20	52	9	43	2	43	1.52
27670--34066	158	40.4	157	66	13	1957	36	14	18	30	1.90
27635--36276	475	18.1	475	78	7	6527	36	13	18	30	1.90
27639--34129	159	41.0	156	66	13	1186	36	13	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34333--34410	39	2.0	39	100	0	156	33	17	12	35	1.88
37059--38909	475	3.9	472	86	3	2519	36	13	17	31	1.89
38553--39219	310	2.1	311	86	5	920	36	11	18	32	1.88
38084--39695	781	2.0	791	85	4	2193	36	12	18	32	1.89
37118--41008	159	24.6	157	65	14	984	36	13	18	31	1.90
38872--41067	475	4.6	474	85	3	2625	36	13	19	30	1.90
38872--41067	949	2.3	945	83	3	2685	36	13	19	30	1.90
41792--45073	475	6.9	474	82	4	3903	35	13	19	30	1.91

Tables:   1

The End!